XLOC_004648


Basic Information

Item Value
gene id XLOC_004648
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18861278 ~ 18867975 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010915
TGAAGGTGTTGAATGGACACACAAGAGATTGGAAGACACACAATCACAATAAGGAGGGAAACCACATTAGGAGGAGAGATGAAGACACTATAGATAAACTGGACCAGATAAGcaccactcatcaatgtcagttccaaagcagcATTCCAATCAGAAACACTCAGAGGTTCTGTTGACAGTAAGTTGGCTTGACAACTGTTTGACTGCAACATCGGAGAGcaggtgatttttaaaaaattatcctGAGCACTGCATTCACttacattaatttttaaatgcaaagacaCATTCTGTGTAAATAGCCTTGGCAATTACATCTCATAATTTATCACAAAAGTAAAAACTAACCACTAAATAGCTTCCTACTCAAGTTTTAATTCCGGTAGTGTTTCAGGTGGATCAACTTGttcttttaacatttaatcattgGACAACTGATGAAGCTGCAACAAAAATCTGATGTTGTTTTCTTTATTCTCCGAAGTGGTGGAACAATCACAACAGggccacctgaccaatcagagcagagtagaagtaaaagagtaaaaagtaaattgcatttatttgagATGTACACCTAGGAGACCAACAGAACAATTTAAAATAGCATAACAGGCACTTTCAGACATGGctgaaaatgtttaaaagcacAGTTCAATATACATTCAACATCTGTGCAAACATTTACTGTGCTTTGAATGGAATGAATTGAAATTTATAAATAAGATGTCTCGAGCTGTGAAGTGCAGCAGTAGCTTCAAAAAAAGTTAATCTGTGGAGAAGTTTAATCTTAAAGCAGAGTGTTAATCGCAGGAGAACTCTTAATCTTGTAAGAAGAGTTAATCTGGTGAGCTGTGTTCAGCGTGTGGGAAATGCTCTTGGAGAGGTGTTAACCTCCGAGAAGTGCTAATCTTTGGATGAATATTTTCGTTTTCTAAATGTGTTCATCTCAATAGGACTGTTTACATTACTGGGTCATTTCATGTCTGAAATGGGGTTATGACAGAATGCTGAGAGAATTATAAATTCCTcgtaatttgttttattgcttgtGACAGGTAATTTGATATTCATAAAAGGATTCTGAATATTTTGAACAATGAGAACAAAAGGTTGGATTTGACATTCTGAGTGAAAAGATCAGGAAGAAGAATTGGAGTTTGAGACATATAGAAATATTGGATTGGGTTAGCTTTTTCAGTGCATTGAtgctaataatatttaaatagccTAAGGACAACATTCTGCACATTTTATTGaactctttttttatgtttttatgcttCTTGTACCAGTGATGGTTAAAAGAGCATGAGCAGCATACATACAGAATTAATGGCATTAGTTGGCTGGATGCTGCACTAAATTTTTAGTCTTTCTCTGTAAGTGATAAAGATGTTAAGCTGGTTGTTGACTTTGAGTTTATGATTTACCAatgaccacagtttcagctaaaaatattaattaatgatgTAATGAAGAAAAGTTCCCAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010915 True 1494 lncRNA 0.35 2 18861278 18867975

Neighbor

gene id symbol gene type direction distance location
XLOC_004647 mrtfab coding upstream 73819 18718065 ~ 18787459 (+)
XLOC_004646 rgs9b coding upstream 143619 18681423 ~ 18717659 (+)
XLOC_004645 si:ch211-147h1.4 coding upstream 194996 18663154 ~ 18666282 (+)
XLOC_004643 grid2ipb coding upstream 205040 18578597 ~ 18656238 (+)
XLOC_004644 AL772266.2 coding upstream 262314 18598850 ~ 18598964 (+)
XLOC_004649 xrcc6 coding downstream 31421 18899396 ~ 18904360 (+)
XLOC_004650 josd1 coding downstream 38432 18906407 ~ 18915531 (+)
XLOC_004651 cbx7b coding downstream 48310 18916285 ~ 18922976 (+)
XLOC_004652 l3mbtl2 coding downstream 102815 18970790 ~ 18991178 (+)
XLOC_004653 PLBD1 coding downstream 161310 19029285 ~ 19035647 (+)
XLOC_004635 NA non-coding upstream 633274 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 non-coding upstream 735504 18125658 ~ 18125774 (+)
XLOC_004625 NA non-coding upstream 1433898 17424431 ~ 17427380 (+)
XLOC_004624 AL731788.1 non-coding upstream 1515611 17345550 ~ 17345667 (+)
XLOC_004660 NA non-coding downstream 399784 19267759 ~ 19271156 (+)
XLOC_004667 BX649366.2 non-coding downstream 520168 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 590834 19458809 ~ 19459285 (+)
XLOC_004675 NA non-coding downstream 1395610 20263585 ~ 20265465 (+)
XLOC_004679 NA non-coding downstream 1623644 20491619 ~ 20504801 (+)

Expression


Co-expression Network