XLOC_004651 (cbx7b)


Basic Information

Item Value
gene id XLOC_004651
gene name cbx7b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18916285 ~ 18922976 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009213
GCGCGCTGCGCGCTGCAGATGTGTCGCAGATTTAAAAAGTCACTGTACTCCTCTAGTACAAGGAAATGGAGCAGtgcaaagcataaaaatactgaTTTGTAAACAAGGCAGCGGAAGAGCGCGAACGTGTGCAGCCATTCTAACAGTACGTGGCGTTTGCATTGTATACTTTAACGATAGCAGGGAACGCGCAAAGACACATTGACAGCTACTTCATTGTATCAAAAGAACTTAACGTTAACCGATGGAACTGTCGGCAATCGGCGAGCAAGTGTTCGCTGTGGAATCAATCACAAAGAAAAGAGTTAGGAAGGGTCACGTGGAGTATTTATTGAAGTGGAAGGGGTGGCCTCcaaaATACAGCACATGGGAGCCAGAGGAGCACATCCTCGACCCTCGACTGGTTTTGGCGTATGAGGAAAAAGAACAGAAAGAAAGATCAGTGGTGTGGCGAAAGAGAGGCCGAAAACCTAAAAGACTCCATGAGCAGAGGAGCATTTACACGATGGACCTCCgcagcacacacagacacacagaccagTCTTCAGCTCATCTGCCACTCTCGCTGGACCCCAGGTTTCAGTCCACTGAGGCTTGTATATTTCAACAGCTCAATCACCACAAGAAAAAGAAGAGAGCAGAGACGTCTGAGGAAGAGTGGGACAGAAGGGAAGAAGAGgacgatgatgaagatgatgaagggGTCATGGAGGAGGGTGAAGAAGAGGAAACGAGACTAGGAGGAACTAAAACTGGCAGCAGCACTTTAAACAAGCACGTCAGGAGAGAGGACTGGAGTCCGACCACTGAATCAGAGGCAATGAGTTTACCTGAAGACTGGAGTCCAGTGATGGGCCCGGAGGAAGTGATGGTGACGGACATCACCATCAACTCACTGACTGTGACTTTCAGAGAGGCTTTGGTTGCGAGAGGCTTCTTCAGCAGCTGGGAGATGGAGATCTGAACGCACAGAGACTTGAGGATGCGGAGAGcaagatgacaagacttttggtACATcctattttttgtattgttaatTATGTCGCTCGCACAACTGCCATGTTCAGTGTTCCAGACTACATTTTTTTGCACTATTAGTACTAATCAATGTAAACCTTCCTAAATAGGATTGTGATTGAAGTCAGTCACAGTAACAGTATTATTTCATATCGTTTCATGGGATTTTCTTGAAACAAGCAGTATTCTGATATTggtttttactgcattttgttAGTTTACCAAGATCATATATTTACTCTGTCCATATATATAGACATTGCatgttatgtatgtatgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacattacgtacatacatacatacatacatacatacatacacacacaatgtaTTTTCCAGAATATAAGTCTCAAATGAGTATAAAGTTGCCTTATATTATAAAGAACTATTTGCAAATGCACTTCCTAGTCAGAAATTAGActctaaaatctttatttaaaagGAAAATTCCTGATGAGAAAGGTTTGATTTCCAAGTTTGACGAGCTATAAACTTTAATTCCCCTAATTCTACATCAAATCCTCTGTGTTACCCGGAAGTTACGACTGAATTTACTATTGTGACCTATTTCTGCCAG

Function

symbol description
cbx7b Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PcG protein complex. Is expressed in several structures, including digestive system; eye; heart; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; multiple myeloma; and myeloid leukemia. Orthologous to human CBX7 (chromobox 7).

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0031519 PcG protein complex cellular_component
GO:0035102 PRC1 complex cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110613-2 Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PcG protein complex. Is expressed in several structures, including digestive system; eye; heart; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; multiple myeloma; and myeloid leukemia. Orthologous to human CBX7 (chromobox 7).

Ensembl:

ensembl_id ENSDARG00000087181

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009213 True 1678 mRNA 0.41 6 18916285 18922976

Neighbor

gene id symbol gene type direction distance location
XLOC_004650 josd1 coding upstream 754 18906407 ~ 18915531 (+)
XLOC_004649 xrcc6 coding upstream 11925 18899396 ~ 18904360 (+)
XLOC_004648 NA coding upstream 48310 18861278 ~ 18867975 (+)
XLOC_004647 mrtfab coding upstream 128826 18718065 ~ 18787459 (+)
XLOC_004646 rgs9b coding upstream 198626 18681423 ~ 18717659 (+)
XLOC_004652 l3mbtl2 coding downstream 47814 18970790 ~ 18991178 (+)
XLOC_004653 PLBD1 coding downstream 106309 19029285 ~ 19035647 (+)
XLOC_004654 kctd17 coding downstream 113404 19036380 ~ 19065298 (+)
XLOC_004655 phf5a coding downstream 215476 19138452 ~ 19143692 (+)
XLOC_004656 cby1 coding downstream 265566 19188542 ~ 19191679 (+)
XLOC_004644 AL772266.2 non-coding upstream 317321 18598850 ~ 18598964 (+)
XLOC_004635 NA non-coding upstream 688281 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 non-coding upstream 790511 18125658 ~ 18125774 (+)
XLOC_004625 NA non-coding upstream 1488905 17424431 ~ 17427380 (+)
XLOC_004660 NA non-coding downstream 344783 19267759 ~ 19271156 (+)
XLOC_004667 BX649366.2 non-coding downstream 465167 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 535833 19458809 ~ 19459285 (+)
XLOC_004675 NA non-coding downstream 1340609 20263585 ~ 20265465 (+)
XLOC_004679 NA non-coding downstream 1568643 20491619 ~ 20504801 (+)

Expression


Co-expression Network