XLOC_004655 (phf5a)


Basic Information

Item Value
gene id XLOC_004655
gene name phf5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19138452 ~ 19143692 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009222
TTAGACCAAAATATCCGAAGAAGAAAGTTCGGAGGTCAGCGCTGCGTCGACGCTTGCTAGCTTGTTCTCTGCGCTCACTCTTTTATAATGGCAAAACATCACCCAGATTTGATCTTTTGCAGAAAACAGGCTGGAGTTGGTGATGGCAAATGCGTGATCTGCGACTCTTATGTCAGACCGTGTACACTGGTTCGTATTTGCGATGAATGCAACTATGGCTCTTACCAAGGACGCTGCGTGATCTGTGGAGGTCCTGGAGTGTCTGATGCCTATTACTGCAAAGAGTGCACCATACAGGAGAAAGACAGAGACGGCTGTCCCAAGATCGTAAATCTGGGCAGCTCAAAGACTGATCTGTTCTATGAGAGGAAAAAATACGGCTTCAAGAAGAGGTGA
>TCONS_00009223
TTAGACCAAAATATCCGAAGAAGAAAGTTCGGAGGTCAGCGCTGCGTCGACGCTTGCTAGCTTGTTCTCTGCGCTCACTCTTTTATAATGGCAAAACATCACCCAGATTTGATCTTTTGCAGAAAACAGGCTGGAGTTGCCATTGGAAGACTGTgtgaaaaatGTGATGGCAAATGCGTGATCTGCGACTCTTATGTCAGACCGTGTACACTGGTTCGTATTTGCGATGAATGCAACTATGGCTCTTACCAAGGACGCTGCGTGATCTGTGGAGGTCCTGGAGTGTCTGATGCCTATTACTGCAAAGAGTGCACCATACAGGAGAAAGACAGAGACGGCTGTCCCAAGATCGTAAATCTGGGCAGCTCAAAGACTGATCTGTTCTATGAGAGGAAAAAATACGGCTTCAAGAAGAGGTGAAGAAAGAAACggaaggagttttttttttgtcaaagtaGCTTTTTTTGTGCACGATTATTTCATTTTGTTATCAGACTAAATTGAataaaaagatgtttttaaata
>TCONS_00009224
AATTATATGTCTGTTTAACCTGATTTGACCTTTATTTCTTTTGCAGCCATTGGAAGACTGTgtgaaaaatGTGATGGCAAATGCGTGATCTGCGACTCTTATGTCAGACCGTGTACACTGGTTCGTATTTGCGATGAATGCAACTATGGCTCTTACCAAGGACGCTGCGTGATCTGTGGAGGTCCTGGAGTGTCTGATGCCTATTACTGCAAAGAGTGCACCATACAGGAGAAAGACGTGAGTATATCTGCTCTACATTTGCCCAAATTAGTTTTTGACTAAACTGAGAGAGGGCTGGAATAAATATTACATTCGTCAGTAGTTTGAGTTAACTTCAAACGTCATTATGTGGTTTTAGATGTTTGCATTGTGTTATGTTACTTATTAAAAGGTTGAATTCTCAATTCAAAAATCCAAATGATTAGAGGTGGGGAACTTTAAGGTCTTCAGCATCCGATTACAATTATAGGAGTTACGATCCCAATCCAAAAcatacattgtttattttttcggAAATACATCGATAACagtgtaatataatattaataatgactaatgtaataactgcacactatgaatcatATAATAAGCATTAGaaaatagttaattcattcatCATTTAAGCATTAACTCTGCATTATTAAACAATAGTAAGCAGTTAGGCTAACACAATTTTTAGCCTAtgattgagtctatttatttaactatttacttgtgtaaatgtgttataaatatatattatttcaataatattattgacaaatatgca

Function

symbol description
phf5a Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex; U2 snRNP; and precatalytic spliceosome. Orthologous to human PHF5A (PHD finger protein 5A).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0071011 precatalytic spliceosome cellular_component
GO:0005686 U2 snRNP cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-021219-3 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex; U2 snRNP; and precatalytic spliceosome. Orthologous to human PHF5A (PHD finger protein 5A).

Ensembl:

ensembl_id ENSDARG00000045155

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009222 False 396 mRNA 0.47 3 19138452 19143587
TCONS_00009223 False 525 mRNA 0.42 4 19138452 19143692
TCONS_00009224 True 769 lncRNA 0.33 2 19139343 19140651

Neighbor

gene id symbol gene type direction distance location
XLOC_004654 kctd17 coding upstream 73154 19036380 ~ 19065298 (+)
XLOC_004653 PLBD1 coding upstream 102805 19029285 ~ 19035647 (+)
XLOC_004652 l3mbtl2 coding upstream 147274 18970790 ~ 18991178 (+)
XLOC_004651 cbx7b coding upstream 215476 18916285 ~ 18922976 (+)
XLOC_004650 josd1 coding upstream 222921 18906407 ~ 18915531 (+)
XLOC_004656 cby1 coding downstream 44850 19188542 ~ 19191679 (+)
XLOC_004657 slc16a8 coding downstream 48095 19191787 ~ 19198771 (+)
XLOC_004658 pdap1a coding downstream 56043 19199735 ~ 19204444 (+)
XLOC_004659 sh3bp1 coding downstream 61394 19205086 ~ 19232997 (+)
XLOC_004660 NA coding downstream 124067 19267759 ~ 19271156 (+)
XLOC_004648 NA non-coding upstream 270477 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 539488 18598850 ~ 18598964 (+)
XLOC_004635 NA non-coding upstream 910448 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 non-coding upstream 1012678 18125658 ~ 18125774 (+)
XLOC_004625 NA non-coding upstream 1711072 17424431 ~ 17427380 (+)
XLOC_004667 BX649366.2 non-coding downstream 244451 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 315117 19458809 ~ 19459285 (+)
XLOC_004675 NA non-coding downstream 1119893 20263585 ~ 20265465 (+)
XLOC_004679 NA non-coding downstream 1347927 20491619 ~ 20504801 (+)

Expression


Co-expression Network