Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009224 |
| length | 769 |
| lncRNA type | retained_intron |
| GC content | 0.33 |
| exon number | 2 |
| gene id | XLOC_004655 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 19138452 ~ 19143692 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0071011 | precatalytic spliceosome | cellular_component |
| GO:0005686 | U2 snRNP | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-021219-3 | Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U12-type spliceosomal complex; U2 snRNP; and precatalytic spliceosome. Orthologous to human PHF5A (PHD finger protein 5A). |
| ensembl_id | ENSDART00000144771 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010915 | lncRNA | upstream | 271368 | 18861278 ~ 18867975 (+) | True | XLOC_004648 |
| TCONS_00009195 | lncRNA | upstream | 594722 | 18543792 ~ 18544621 (+) | False | XLOC_004641 |
| TCONS_00010914 | lncRNA | upstream | 911339 | 18209871 ~ 18228004 (+) | True | XLOC_004635 |
| TCONS_00010912 | lncRNA | upstream | 1399887 | 17715697 ~ 17739456 (+) | False | XLOC_004630 |
| TCONS_00010732 | lncRNA | downstream | 127108 | 19267759 ~ 19271156 (+) | True | XLOC_004660 |
| TCONS_00009244 | lncRNA | downstream | 244787 | 19385438 ~ 19388378 (+) | True | XLOC_004666 |
| TCONS_00010733 | lncRNA | downstream | 318158 | 19458809 ~ 19459285 (+) | True | XLOC_004670 |
| TCONS_00010916 | lncRNA | downstream | 1122934 | 20263585 ~ 20265465 (+) | True | XLOC_004675 |
| TCONS_00009263 | lncRNA | downstream | 1203238 | 20343889 ~ 20346635 (+) | False | XLOC_004677 |
| TCONS_00009220 | mRNA | upstream | 74045 | 19036380 ~ 19065298 (+) | False | XLOC_004654 |
| TCONS_00009221 | mRNA | upstream | 80574 | 19036468 ~ 19058769 (+) | True | XLOC_004654 |
| TCONS_00009219 | mRNA | upstream | 103696 | 19030391 ~ 19035647 (+) | True | XLOC_004653 |
| TCONS_00009218 | mRNA | upstream | 103813 | 19029285 ~ 19035530 (+) | False | XLOC_004653 |
| TCONS_00009217 | mRNA | upstream | 148165 | 18971100 ~ 18991178 (+) | True | XLOC_004652 |
| TCONS_00009225 | mRNA | downstream | 47891 | 19188542 ~ 19190165 (+) | False | XLOC_004656 |
| TCONS_00009226 | mRNA | downstream | 47910 | 19188561 ~ 19191679 (+) | False | XLOC_004656 |
| TCONS_00009227 | mRNA | downstream | 47921 | 19188572 ~ 19190201 (+) | True | XLOC_004656 |
| TCONS_00009228 | mRNA | downstream | 51136 | 19191787 ~ 19198771 (+) | False | XLOC_004657 |
| TCONS_00009229 | mRNA | downstream | 52909 | 19193560 ~ 19198599 (+) | True | XLOC_004657 |
| TCONS_00009203 | other | upstream | 439721 | 18681423 ~ 18699622 (+) | False | XLOC_004646 |
| TCONS_00009200 | other | upstream | 540379 | 18598850 ~ 18598964 (+) | True | XLOC_004644 |
| TCONS_00009179 | other | upstream | 1013569 | 18125658 ~ 18125774 (+) | True | XLOC_004634 |
| TCONS_00009175 | other | upstream | 1198300 | 17927871 ~ 17941043 (+) | False | XLOC_004633 |
| TCONS_00009172 | other | upstream | 1411692 | 17727542 ~ 17727651 (+) | True | XLOC_004630 |
| TCONS_00009243 | other | downstream | 244775 | 19385426 ~ 19385555 (+) | False | XLOC_004666 |
| TCONS_00009245 | other | downstream | 247492 | 19388143 ~ 19388273 (+) | True | XLOC_004667 |
| TCONS_00009249 | other | downstream | 726347 | 19866998 ~ 19904415 (+) | False | XLOC_004671 |
| TCONS_00009250 | other | downstream | 737191 | 19877842 ~ 19896927 (+) | True | XLOC_004671 |
| TCONS_00009270 | other | downstream | 1358332 | 20498983 ~ 20499080 (+) | True | XLOC_004679 |
