Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009175 |
| length | 972 |
| RNA type | processed_transcript |
| GC content | 0.47 |
| exon number | 10 |
| gene id | XLOC_004633 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 17927871 ~ 18105116 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0016573 | histone acetylation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0006281 | DNA repair | biological_process |
| GO:0035267 | NuA4 histone acetyltransferase complex | cellular_component |
| GO:0000123 | histone acetyltransferase complex | cellular_component |
| GO:0000124 | SAGA complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0003712 | transcription coregulator activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ko05166 | Human T-cell leukemia virus 1 infection |
| ko01001 | Protein kinases |
| ko03021 | Transcription machinery |
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-050809-47 | Predicted to enable transcription coregulator activity. Involved in neuromast hair cell development and startle response. Predicted to be part of NuA4 histone acetyltransferase complex and SAGA complex. Predicted to be active in nucleus. Used to study autosomal dominant nonsyndromic deafness. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 75. Orthologous to human TRRAP (transformation/transcription domain associated protein). |
| ensembl_id | ENSDART00000164740 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010912 | lncRNA | upstream | 188415 | 17715697 ~ 17739456 (+) | False | XLOC_004630 |
| TCONS_00010913 | lncRNA | upstream | 188415 | 17716325 ~ 17739456 (+) | False | XLOC_004630 |
| TCONS_00009171 | lncRNA | upstream | 188415 | 17716512 ~ 17739456 (+) | False | XLOC_004630 |
| TCONS_00009169 | lncRNA | upstream | 297164 | 17626350 ~ 17630707 (+) | True | XLOC_004629 |
| TCONS_00010911 | lncRNA | upstream | 500491 | 17424431 ~ 17427380 (+) | True | XLOC_004625 |
| TCONS_00010914 | lncRNA | downstream | 268828 | 18209871 ~ 18228004 (+) | True | XLOC_004635 |
| TCONS_00009195 | lncRNA | downstream | 602749 | 18543792 ~ 18544621 (+) | False | XLOC_004641 |
| TCONS_00010915 | lncRNA | downstream | 920235 | 18861278 ~ 18867975 (+) | True | XLOC_004648 |
| TCONS_00009224 | lncRNA | downstream | 1198300 | 19139343 ~ 19140651 (+) | True | XLOC_004655 |
| TCONS_00010732 | lncRNA | downstream | 1326716 | 19267759 ~ 19271156 (+) | True | XLOC_004660 |
| TCONS_00009174 | mRNA | upstream | 52601 | 17865374 ~ 17875270 (+) | True | XLOC_004632 |
| TCONS_00009173 | mRNA | upstream | 170966 | 17754859 ~ 17756905 (+) | True | XLOC_004631 |
| TCONS_00009170 | mRNA | upstream | 209186 | 17701625 ~ 17718685 (+) | False | XLOC_004630 |
| TCONS_00009168 | mRNA | upstream | 294144 | 17620067 ~ 17633727 (+) | False | XLOC_004629 |
| TCONS_00009167 | mRNA | upstream | 308347 | 17603528 ~ 17619524 (+) | True | XLOC_004628 |
| TCONS_00009180 | mRNA | downstream | 293514 | 18234557 ~ 18343653 (+) | True | XLOC_004636 |
| TCONS_00009181 | mRNA | downstream | 417039 | 18358082 ~ 18362422 (+) | True | XLOC_004637 |
| TCONS_00009182 | mRNA | downstream | 504561 | 18445604 ~ 18454422 (+) | True | XLOC_004638 |
| TCONS_00009183 | mRNA | downstream | 517459 | 18458502 ~ 18464975 (+) | True | XLOC_004639 |
| TCONS_00009184 | mRNA | downstream | 583910 | 18524953 ~ 18527221 (+) | True | XLOC_004640 |
| TCONS_00009172 | other | upstream | 200220 | 17727542 ~ 17727651 (+) | True | XLOC_004630 |
| TCONS_00009163 | other | upstream | 582204 | 17345550 ~ 17345667 (+) | True | XLOC_004624 |
| TCONS_00009153 | other | upstream | 967090 | 16960693 ~ 16960781 (+) | True | XLOC_004618 |
| TCONS_00009129 | other | upstream | 2546057 | 15381694 ~ 15381814 (+) | True | XLOC_004597 |
| TCONS_00009115 | other | upstream | 3824065 | 14102104 ~ 14103806 (+) | True | XLOC_004585 |
| TCONS_00009179 | other | downstream | 184615 | 18125658 ~ 18125774 (+) | True | XLOC_004634 |
| TCONS_00009200 | other | downstream | 657807 | 18598850 ~ 18598964 (+) | True | XLOC_004644 |
| TCONS_00009203 | other | downstream | 740380 | 18681423 ~ 18699622 (+) | False | XLOC_004646 |
| TCONS_00009243 | other | downstream | 1444383 | 19385426 ~ 19385555 (+) | False | XLOC_004666 |
| TCONS_00009245 | other | downstream | 1447100 | 19388143 ~ 19388273 (+) | True | XLOC_004667 |
