RNA id: TCONS_00009169


Basic Information

Item Value
RNA id TCONS_00009169
length 504
lncRNA type retained_intron
GC content 0.37
exon number 3
gene id XLOC_004629
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17620067 ~ 17633727 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACTGACCCACCTACAGTTTTCGCGCTTTCTCCTGGACTGCAGGGTTCACCAGCATGGAGTCACACTAGCACAAATATATTGTCTTATCAATGGTAATGTATTTGAGCATCTGAATGCTGAGTGAAGATTTCTGTTTTATTAACAAGTAATTATTAACaagttttcttctctttttttttcgtttttcttgtctttttttaattcttgtctttttttatatttaagttcaTTCTCCTTTCACTGCAATTCTTCCAAGAGAGTGTATCAGCTATATTATCATTATAGCGTATCATATTTGCCACAAAGATATTGAATCCTCAAATAACATACTTGCAGCATGTTTTTCAAAGCTCATGAAGCAGAACATCATTCCCAATGCAAAAAGTGTGAAAGGGCACTTGTTCTGCCATCCTGTCCATGCTGCAGTTGCATTGAACTACTCCGACAAGTGCTGGGAAATTTACCAGGCATTGTGTGAAGCACATTCAGTCTTCACTGTCAG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-300 Orthologous to several human genes including RSPH10B2 (radial spoke head 10 homolog B2).

Ensembl:

ensembl_id ENSDART00000136499

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010911 lncRNA upstream 198970 17424431 ~ 17427380 (+) True XLOC_004625
TCONS_00009162 lncRNA upstream 414681 17201556 ~ 17211669 (+) True XLOC_004623
TCONS_00009160 lncRNA upstream 421956 17201527 ~ 17204394 (+) False XLOC_004623
TCONS_00010910 lncRNA upstream 751647 16742395 ~ 16874703 (+) True XLOC_004615
TCONS_00010909 lncRNA upstream 1041296 16583373 ~ 16585054 (+) True XLOC_004614
TCONS_00010912 lncRNA downstream 84990 17715697 ~ 17739456 (+) False XLOC_004630
TCONS_00010913 lncRNA downstream 85618 17716325 ~ 17739456 (+) False XLOC_004630
TCONS_00009171 lncRNA downstream 85805 17716512 ~ 17739456 (+) False XLOC_004630
TCONS_00010914 lncRNA downstream 579164 18209871 ~ 18228004 (+) True XLOC_004635
TCONS_00009195 lncRNA downstream 913085 18543792 ~ 18544621 (+) False XLOC_004641
TCONS_00009167 mRNA upstream 6826 17603528 ~ 17619524 (+) True XLOC_004628
TCONS_00009166 mRNA upstream 63647 17504559 ~ 17562703 (+) True XLOC_004627
TCONS_00009164 mRNA upstream 170267 17436904 ~ 17456083 (+) False XLOC_004626
TCONS_00009165 mRNA upstream 170279 17439580 ~ 17456071 (+) True XLOC_004626
TCONS_00009159 mRNA upstream 303009 17201522 ~ 17323341 (+) False XLOC_004623
TCONS_00009170 mRNA downstream 70918 17701625 ~ 17718685 (+) False XLOC_004630
TCONS_00009173 mRNA downstream 124152 17754859 ~ 17756905 (+) True XLOC_004631
TCONS_00009174 mRNA downstream 234667 17865374 ~ 17875270 (+) True XLOC_004632
TCONS_00009176 mRNA downstream 297164 17927871 ~ 18105116 (+) False XLOC_004633
TCONS_00009178 mRNA downstream 303068 17933775 ~ 18104154 (+) False XLOC_004633
TCONS_00009163 other upstream 280683 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009153 other upstream 665569 16960693 ~ 16960781 (+) True XLOC_004618
TCONS_00009129 other upstream 2244536 15381694 ~ 15381814 (+) True XLOC_004597
TCONS_00009115 other upstream 3522544 14102104 ~ 14103806 (+) True XLOC_004585
TCONS_00009106 other upstream 3968206 13658022 ~ 13658144 (+) True XLOC_004581
TCONS_00009172 other downstream 96835 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009175 other downstream 297164 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009179 other downstream 494951 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009200 other downstream 968143 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009203 other downstream 1050716 18681423 ~ 18699622 (+) False XLOC_004646

Expression Profile

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