RNA id: TCONS_00010910



Basic Information


Item Value
RNA id TCONS_00010910
length 491
lncRNA type read_through
GC content 0.30
exon number 2
gene id XLOC_004615
representative True

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16742395 ~ 16874703 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ttttaatacagcaaaacactggctattttacagttatttactgcataatctacagtaagggttaacagtgtgtgtaatgcattattaacatccaaattcatgtttggtaacattagttaatgcaccatgagttatcTATTACCAAtgaaaaactttattttcattgaCTAACAAGCAAATACTTACTGTTACCAATAGTGCATATCAAAACAATATTGTTGAATGCTGAGATTTGTacctttaattatattttgtgtgGTAATTTGATCCAGTTATACAGAATTGTATTACATAATCAGAATAGCTTCGTCTTAATCTGCTCCATTAAATTCAACACAGGTCAACTGCAAgaatcactttaaacatttaatatgtatgGCATTCCTACAtgatatgcaaataaacacaGTACAGACTTTTGCCATGCcagaaaattttatatttatccaTTTGCAGGTCAAATAGATCCAGTACAGAATTCTCATTCTTGC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00010909 lncRNA upstream 157341 16583373 ~ 16585054 (+) True XLOC_004614
TCONS_00010907 lncRNA upstream 172351 16567854 ~ 16570044 (+) False XLOC_004613
TCONS_00010908 lncRNA upstream 172351 16568492 ~ 16570044 (+) True XLOC_004613
TCONS_00010906 lncRNA upstream 250589 16490198 ~ 16491806 (+) True XLOC_004612
TCONS_00010905 lncRNA upstream 254828 16486965 ~ 16487567 (+) True XLOC_004611
TCONS_00009160 lncRNA downstream 326824 17201527 ~ 17204394 (+) False XLOC_004623
TCONS_00009162 lncRNA downstream 326853 17201556 ~ 17211669 (+) True XLOC_004623
TCONS_00010911 lncRNA downstream 549728 17424431 ~ 17427380 (+) True XLOC_004625
TCONS_00009169 lncRNA downstream 751647 17626350 ~ 17630707 (+) True XLOC_004629
TCONS_00010912 lncRNA downstream 840994 17715697 ~ 17739456 (+) False XLOC_004630
TCONS_00009149 mRNA upstream 263104 16452575 ~ 16479291 (+) False XLOC_004610
TCONS_00009150 mRNA upstream 263328 16452912 ~ 16479067 (+) True XLOC_004610
TCONS_00009148 mRNA upstream 296022 16440708 ~ 16446373 (+) True XLOC_004609
TCONS_00009146 mRNA upstream 454110 16284086 ~ 16288285 (+) False XLOC_004608
TCONS_00009145 mRNA upstream 455851 16281312 ~ 16286544 (+) False XLOC_004608
TCONS_00009151 mRNA downstream 74688 16949391 ~ 16951851 (+) True XLOC_004616
TCONS_00009152 mRNA downstream 78712 16953415 ~ 16964840 (+) True XLOC_004617
TCONS_00009154 mRNA downstream 93012 16967715 ~ 16986968 (+) True XLOC_004619
TCONS_00009155 mRNA downstream 168051 17042754 ~ 17043874 (+) True XLOC_004620
TCONS_00009156 mRNA downstream 225318 17100021 ~ 17116481 (+) False XLOC_004621
TCONS_00009129 other upstream 1360581 15381694 ~ 15381814 (+) True XLOC_004597
TCONS_00009115 other upstream 2638589 14102104 ~ 14103806 (+) True XLOC_004585
TCONS_00009106 other upstream 3084251 13658022 ~ 13658144 (+) True XLOC_004581
TCONS_00009101 other upstream 3285039 13457237 ~ 13457356 (+) True XLOC_004579
TCONS_00009094 other upstream 3449628 13283774 ~ 13292767 (+) True XLOC_004575
TCONS_00009153 other downstream 85990 16960693 ~ 16960781 (+) True XLOC_004618
TCONS_00009163 other downstream 470847 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009172 other downstream 852839 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009175 other downstream 1053168 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009179 other downstream 1250955 18125658 ~ 18125774 (+) True XLOC_004634

Expression Profile


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