RNA id: TCONS_00009148


Basic Information

Item Value
RNA id TCONS_00009148
length 1348
RNA type mRNA
GC content 0.40
exon number 9
gene id XLOC_004609
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16440708 ~ 16446373 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCACTACATATATAAGTGATGCTCCATCAGAAGCATTCATTTTAACACAAAGAGTTTTCAAGAAAAATCATGGGAATCCTGCAGGTCGAAGAGCTGgttaCAGACATCACAGGTGGAAACACAGATCAGGACACCACTGTACAGAAACGTCCATCTGAAGAATGCAAGAGCTCTGCTGACCATCATCTGAAACCCTACAACAACCTTCAGTGTGAGGGTGAAGTCATTCTCAGCGGCCTTGATACTGACAACAGCACTAATGACCTCCAGGTTGTGAAAAACAGTGTGCAGACAGAAGTCTACAAAAAACAGCCCAAACAAGAGCTAGTGAATGATTTTGTGGATGAAGATGACTTCCTGAAGGCAGCGCTGGATAATAAATTGCCAATGATCAAAAGTTACCTCGCCAGAGGTGCAGACCCAAATGCATGTGATAATTTCAATCGTACAGCTCTACACAGAGCTTGCTCACAAGGAAACGTGGAAATTGTGAACGCACTTCTGGAAGCTGGTGCTTCAATAGGAAATAAAGACAAGCTTCAAGCAACTGAAGTCCACTGGGCTTGTCGTGGAGGTAGTTTGCCTGTGCTGGAGGCACTACTTAATCACGGGGCAAACCTGGATGCCAGAGACAAGCTTCGCAGCACTGCTCTTCATGTGGCGGTCAAGACAGGACACTACGAATGTGCTGAACATCTCATCCACTGTGGCGCAGATGTCAACGCAAAAGACATAGAGGGTGACACGCCATTGCACGACGCAGTCAGCCTGAATCGTTTCAAACTCATCCAGCTTCTTCTACTGCACGGAGGGGACTTACATATCAAGAACTTTGAGGGAAAGTCACCTATGGACAAGGTGTGTGAGTGGCAGAATGGAGCAAAATCAATCTTTGACAACTttcaagacaataaaaaataaatgcatcacatgaccACCTGGACAACTCTGGGCTTAATATCATCCAAATAAACTATTATGAGATATTATGAGCCTGCATATTAAAATCTAATATGTGAAGAAGATATATTATTGAGTTATAAGAATGTTTTGAGAGTTTTGGCAAAGCACttcaacttttttattattaaattatagagAAAACAGAAAGGAATGCGAAGCCTAAATAAATATCGTCTTCTTTTGTTGACATGGGAATACAAATGAAACTGCTGAAATTAAATCATGAATGATAGGTGTGATTTGATATTCCAAAACTTTATTACAGAATGTGCTTTTTGTGCATGACGTCTGTACAGAATATGACATAAGAATTTTTGTACTATTATATGTAAATTTTGCTTGCAATTCCATTAAACCTTaactaataaaatacatttttaaca

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070820-13 Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in heart; musculature system; myotome; post-vent region; and skeletal muscle. Human ortholog(s) of this gene implicated in congenital structural myopathy; dilated cardiomyopathy; hypertrophic cardiomyopathy; nemaline myopathy; and spinal muscular atrophy. Orthologous to human ANKRD1 (ankyrin repeat domain 1).

Ensembl:

ensembl_id ENSDART00000113810

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010902 lncRNA upstream 211158 16216648 ~ 16229550 (+) False XLOC_004606
TCONS_00010903 lncRNA upstream 211158 16217084 ~ 16229550 (+) False XLOC_004606
TCONS_00010904 lncRNA upstream 211158 16218058 ~ 16229550 (+) True XLOC_004606
TCONS_00010901 lncRNA upstream 492157 15948036 ~ 15948551 (+) True XLOC_004603
TCONS_00010731 lncRNA upstream 514911 15904124 ~ 15925797 (+) True XLOC_004602
TCONS_00010905 lncRNA downstream 40592 16486965 ~ 16487567 (+) True XLOC_004611
TCONS_00010906 lncRNA downstream 43825 16490198 ~ 16491806 (+) True XLOC_004612
TCONS_00010907 lncRNA downstream 121481 16567854 ~ 16570044 (+) False XLOC_004613
TCONS_00010908 lncRNA downstream 122119 16568492 ~ 16570044 (+) True XLOC_004613
TCONS_00010909 lncRNA downstream 137000 16583373 ~ 16585054 (+) True XLOC_004614
TCONS_00009146 mRNA upstream 152423 16284086 ~ 16288285 (+) False XLOC_004608
TCONS_00009145 mRNA upstream 154164 16281312 ~ 16286544 (+) False XLOC_004608
TCONS_00009147 mRNA upstream 154280 16284113 ~ 16286428 (+) True XLOC_004608
TCONS_00009144 mRNA upstream 164432 16233077 ~ 16276276 (+) True XLOC_004607
TCONS_00009141 mRNA upstream 211306 16132612 ~ 16229402 (+) False XLOC_004606
TCONS_00009149 mRNA downstream 6202 16452575 ~ 16479291 (+) False XLOC_004610
TCONS_00009150 mRNA downstream 6539 16452912 ~ 16479067 (+) True XLOC_004610
TCONS_00009151 mRNA downstream 503018 16949391 ~ 16951851 (+) True XLOC_004616
TCONS_00009152 mRNA downstream 507042 16953415 ~ 16964840 (+) True XLOC_004617
TCONS_00009154 mRNA downstream 521342 16967715 ~ 16986968 (+) True XLOC_004619
TCONS_00009129 other upstream 1058894 15381694 ~ 15381814 (+) True XLOC_004597
TCONS_00009115 other upstream 2336902 14102104 ~ 14103806 (+) True XLOC_004585
TCONS_00009106 other upstream 2782564 13658022 ~ 13658144 (+) True XLOC_004581
TCONS_00009101 other upstream 2983352 13457237 ~ 13457356 (+) True XLOC_004579
TCONS_00009094 other upstream 3147941 13283774 ~ 13292767 (+) True XLOC_004575
TCONS_00009153 other downstream 514320 16960693 ~ 16960781 (+) True XLOC_004618
TCONS_00009163 other downstream 899177 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009172 other downstream 1281169 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009175 other downstream 1481498 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009179 other downstream 1679285 18125658 ~ 18125774 (+) True XLOC_004634

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_00659693_00662317.mRNA True 1092 mRNA 0.42 9 CI01000063 659630 ~ 662425 (+)