RNA id: TCONS_00009152


Basic Information

Item Value
RNA id TCONS_00009152
length 2959
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_004617
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16953415 ~ 16964840 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGAAGTGGAGGCATTTTCCTTAGTGACGTCGCATACCGGCTGTTTGACTCGGAAACAGCCCAGCGTGTAAAGAAGAAATGACCGACAGTGACCTCGAATAAGATGTTGAAGACCTCTCTATTGTCTTCGCCTCTTCGCAACACATCAGCATATATGTAGAATTCTGACAAACAATACTACATTTTGAAGCGCCTTCGAATCGTCGAGTCGTTATCAGCTGTCTGTCTTCTGAGTGTTCACATTTGCTGCGTGAAATAATGGAAAATGAAGAAACATCCGATCAAAACGGAACGACGCACTACAAAAAAGGTTTAGTAAACGGATTTCACCCCGCACAGTCGGGTAACGGCGATTGCATTTCGTCCAACGGAGGTGGTCTGGGTACTAGTGACAGTAGCGGTGGCCATAATGGTATTGAAAATTTCCACCATCTTCATCAGGATGTACACAACAATGGTTCGCCTGCGAAGCGCTGCAGACTCAGAAGACGAGTGGATTCGGGAAAGAAGAACAGACCACccttTCCGTGGTTTGGCATGGATATTGGAGGCACCTTGGTGAAGCTGGTTTATTTTGAGCCCAAGGACATAACAGCTGAAGAAGAACAAGAGGAAGTGGAGAGCCTGAAGAGCATCCGCTGGTACCTGACATCCAACGTTGCCTATGGAAACACTGGAATCCGTGATGTTCACCTGGAGTTGAAGAACCTCACCATGTGCGGCCGCAAAGGCAACCTGCACTTCATTCGGTTCCCCACACAAGACATGCACCGCTTTATCCAAATGGGCCGAGACAAGAACTTCTCTAGTCTGCACACCACTCTATGCGCCACCGGTGGGGGGGCGTACAAATTTGAGGATGACTTCAGAACGGTGGCTGATTTGGAGCTGCAGAAGTTGGATGAACTAGATTGTCTTATTCAAGGTCTGCTGTACGTTGATTCAGTCGGGTTCAATGGCCATCCAGAAtgttattttttccaaaatcCATCTGAACCTGAAAACTGTGTCAAGAGGCCATTTAGCCTGGAGAACCCTTTCCCTATGTTGCTGGTAAATATTGGCTCTGGCGTTAGTATCCTGGCCGTCTATTCCAAGGATGATTACAAGCGGGTCACAGGCACCAGTTTAGGAGGTGGTACCTTTCTTGGCCTGTGCTGCTTGCTGACTGGCTGTGAAACATTTGAGGAGGCATTAGAAATGGCGGCTAAAGGGGACAGCACTAACGTGGACAAACTAGTGAAGGATATTTATGGAGGCGATTATGAACGATTTGGCCTTCAGGGTTCGGCCGTTGCATCTAGtttttgtcATATGATGAGCAAGGAGAAACGCGATAGTATAAGTAAAGAAGACCTGGCCAGGGCGACTCTTGTCACCATAACAAACAACATTGGCTCCATCGCTCGCATGTGTGCAGTGAACGAGAATATCGATAAAGTGGTTTTTGTTGGAAATTTCCTTCGGATCAACACCATTTCAACTAAGCTGCTGGCCTATGCCATGGACTTCTGGTCTGATGGACAACTGAAAGCTCTTTTCTTAGAACATGAaGGTTATTTTGGAGCTGTCGGTGCCTTCCTAGAGCTGCTGAAGATGACAGAAGATTCCTGAGACACTGAAGAAAACCCAACCTACAAACCAGAAGCTGCTGTAAGATTTCAGGAAAGCCACATCCCCTAATAAGGATAAGCCATTTAATAATGTGACCGAGTTTCCATTTAGCTTCAAATCATCGACACATCGGCTCTTCTATGCTCAAGATGTGAGTAGGTGACCAAGAGGAGGTGATGTAACAGCAGCGCATAGAATTTAGCATTGTGATTAGCTGCACCTCATGCTAACTGTTCCTCATCACCACTGCTACAAAGCCAGCACAGCTGTGCCTTTGCCGTGTATCGATGATTTGAGGTGATGATGATTTAGGACACTAATTGTATGCCTGTATGCTCTCTCTACACCCTGAGCTTtatgaaaataatcataacataTGAAAAGGGTTTGGAGGGGGAGTATAATGTCTACTTGTGGGACAGTCTGCTGTATAAATTAACCTTCCCCTCTAATCAGATTACTCATAAAATGATGATGAGTGTTCCATAAGTGTTATTTACATAGGATTTTGCCTTTCCTGTTCTAGTCACATCTAAGCATTCATCATATCcgcattaaattaaaaaggctaaaGTTGTATTAATAAGCATTTTAAGGCACGAGTTCAAATTTCTCCTTTTGTAAATAATACAGCAAATGCCAATTGAATTTCAGTCATTTTTCAATCATATAAATCTTTTATCTGAACCCTTTTAGagaatagcaaaaaaaataattacaaacaaacaaaaaacgtaGGTCAGACATAGGTCTCTTTTTATCTTGATTGGGCCTTTTGTGTTTAGTAGATTGTTGAGTACTGTCATGTCTGATTTCTAATATATTTACCTCTTTGAACTGGTCTGTCTAATGAACAGAGAATATGCATCTAAGCTGACACTAATTGTGTTGGGACCAAATTGTCAATATTGACTGGAAAACAGTATCTTCATCAGATGGAGAATTCTCATAGTTCACTACATACAGTAAGTCCCGTGATGAATTTTATAGGATTTTACGGTCCATAATGCTGAGATTTCTCTGGTCTGAATGTGTTAACAGTTTACCCTGTGTATATACACTGTAgtatatcatgtttttatttaacttgACATTTGCACAAACCATCTCTTGTCATCATACCATTATGCAGTGATGTCTCAAGTTTTACTTGATATCTGTCAAACCTTCTTCCAAATGCCTTCATCCTTTAAACATTTTCAGTTTGAACGTCACCTGTTACTGAAAATATTTTGCCTTTTTTCCCCCTCACGGATTAACATGTTCATTAACTTTATGCCTAAACACCGTTtaacctttaataataataataatcataataaacatAGTCAGTTTGACTCTGAA

Function

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004594 pantothenate kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-259 Predicted to enable pantothenate kinase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including anterior axial hypoblast; hatching gland; mesoderm; pronephric duct; and sensory system. Orthologous to human PANK1 (pantothenate kinase 1).

Ensembl:

ensembl_id ENSDART00000020824

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010910 lncRNA upstream 78712 16742395 ~ 16874703 (+) True XLOC_004615
TCONS_00010909 lncRNA upstream 368361 16583373 ~ 16585054 (+) True XLOC_004614
TCONS_00010907 lncRNA upstream 383371 16567854 ~ 16570044 (+) False XLOC_004613
TCONS_00010908 lncRNA upstream 383371 16568492 ~ 16570044 (+) True XLOC_004613
TCONS_00010906 lncRNA upstream 461609 16490198 ~ 16491806 (+) True XLOC_004612
TCONS_00009160 lncRNA downstream 236687 17201527 ~ 17204394 (+) False XLOC_004623
TCONS_00009162 lncRNA downstream 236716 17201556 ~ 17211669 (+) True XLOC_004623
TCONS_00010911 lncRNA downstream 459591 17424431 ~ 17427380 (+) True XLOC_004625
TCONS_00009169 lncRNA downstream 661510 17626350 ~ 17630707 (+) True XLOC_004629
TCONS_00010912 lncRNA downstream 750857 17715697 ~ 17739456 (+) False XLOC_004630
TCONS_00009151 mRNA upstream 1564 16949391 ~ 16951851 (+) True XLOC_004616
TCONS_00009149 mRNA upstream 474124 16452575 ~ 16479291 (+) False XLOC_004610
TCONS_00009150 mRNA upstream 474348 16452912 ~ 16479067 (+) True XLOC_004610
TCONS_00009148 mRNA upstream 507042 16440708 ~ 16446373 (+) True XLOC_004609
TCONS_00009146 mRNA upstream 665130 16284086 ~ 16288285 (+) False XLOC_004608
TCONS_00009154 mRNA downstream 2875 16967715 ~ 16986968 (+) True XLOC_004619
TCONS_00009155 mRNA downstream 77914 17042754 ~ 17043874 (+) True XLOC_004620
TCONS_00009156 mRNA downstream 135181 17100021 ~ 17116481 (+) False XLOC_004621
TCONS_00009157 mRNA downstream 141277 17106117 ~ 17115730 (+) True XLOC_004621
TCONS_00009158 mRNA downstream 189815 17154655 ~ 17158635 (+) True XLOC_004622
TCONS_00009129 other upstream 1571601 15381694 ~ 15381814 (+) True XLOC_004597
TCONS_00009115 other upstream 2849609 14102104 ~ 14103806 (+) True XLOC_004585
TCONS_00009106 other upstream 3295271 13658022 ~ 13658144 (+) True XLOC_004581
TCONS_00009101 other upstream 3496059 13457237 ~ 13457356 (+) True XLOC_004579
TCONS_00009094 other upstream 3660648 13283774 ~ 13292767 (+) True XLOC_004575
TCONS_00009163 other downstream 380710 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009172 other downstream 762702 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009175 other downstream 963031 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009179 other downstream 1160818 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009200 other downstream 1634010 18598850 ~ 18598964 (+) True XLOC_004644

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_00737387_00744421.mRNA True 2309 mRNA 0.46 8 CI01000063 737084 ~ 745002 (+)
bowfin (Amia calva) AMCG00002908 True 5474 mRNA 0.41 7 CM030139.1 6094105 ~ 6110512 (+)