RNA id: TCONS_00009156


Basic Information

Item Value
RNA id TCONS_00009156
length 2794
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_004621
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17100021 ~ 17116481 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaattttctgttcCAAACGTATgcataagattttattttatttactttttgctttgtttttacagTACAGCTTGGGAGTTTAAACTTTTAAACTCGTGTGACCTATGTACTTAAGTGACCAAATGTCTTTGCCATTCCTTCTCAGGTGTGGGCCGTGGTGAGCGTCTGTGTAGCAGATCAGGCCCAGCCCTGTGTTTATTCTCGTGCATAGTGAAGTCCCCACAATTTCTGAGGAGAAAAAAGGAAAAGGTCCATTGGAATGCCCAGAGTAAGGAGGCAAGAGGCCGCCCTGGTGCTGCCCGGATTGGAGTGTTTTCTCCCAGTCATCCCTATAAGGCTTTAGTGGAGTGAGGCTACCGATCCGAGTGCAGCCCAGGCTCCTTGTTTGGGATGTTAGAGGGTGTGGTGAGCAGAGATGGAAACTACATAAGTACACCACAAACCAGTGAGGTGTACACCATCACCAAGTGGCTAAATACCCCCCCGGCCCAGCACTGTCAGGtgattGTCTCCTGTTGGAGTAAGAAAGGATATCCGAGCTGAAAATGTGTGACGACGAAGAAAGCACTGCCCTGGTGTGTGACAATGGATCTGGACTGTGTAAGGCAGGCTTCGCCGGGGATGATGCTCCCAGAGCGGTGTTCCCTTCCATAGTGGGACGTCCCAGACATCAGGGAGTGATGGTAGGAATGGGGCAGAAAGATAGTTACGTTGGTGATGAGGCGCAAAGCAAGAGGGGAATCCTGACTCTCAAGTACCCCATCGAGCACGGAATCATCACAAACTGGGACGATATGGAAAAAATCTGGCATCACTCTTTCTACAACGAGCTCCGTGTGGCTCCAGAGGAACACCCCACTCTGTTGACAGAAGCCCCACTTAATCCTAAAGCCAACAGGGAGAAGATGACCCAGATCATGTTTGAGACCTTCAATGTTCCAGCCATGTATGTAGCTATTCAAGCAGTGCTGTCTCTCTATGCTTCTGGACGCACAACAGGCATTGTGCTGGACTCTGGTGATGGTGTCACCCATAACGTACCCATTTATGAGGGCTACGCTCTTCCACATGCCATTATGCGTTTGGACTTGGCCGGCCGTGATCTCACTGACTACCTCATGAAGATCCTAACTGAACGAGGCTACTCATTCGTCACCACTGCTGAAAGAGAAATCGTCCGTGACATCAAGGAGAAGTTGTGCTACGTGGCTCTGGACTTTGAGAATGAGATGGCCACCGCTGCCTCTTCCTCCTCTCTGGAGAAGAGCTATGAGCTTCCCGATGGACAGGTCATCACCATTGGCAATGAGAGGTTCCGCTGTCCTGAGACGCTGTTCCAGCCGTCCTTCATCGGGATGGAATCTGCTGGTATTCATGAAACCACCTACAACAGCATCATGAAATGCGACATTGACATCCGTAAGGATCTGTACGCCAACAATGTGCTGTCTGGCGGTACCACCATGTACCCGGGCATTGCAGACAGGATGCAGAAGGAGATCACTGCTTTGGCTCCCAGCACCATGAAGATCAAGATAATCGCTCCACCTGAGCGCAAGTACTCAGTATGGATCGGCGGCTCCATCCTGGCCTCTCTCTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGATGAAGCCGGACCCTCTATTGTGCATCGCAAGTGCTTCTAGACGACACCTCCAGCCCCCTCCTGGTCCCGTAATTCTGCTATTGCTTCATAGCCTGTAAACTGTGAACCTGCCCTTTATTTCCCTCTATTGTATTGTCTTTGCACTGCCCACTTCTGTTTGAATGTTCTGATCTAATTATGTCATGACCATATAGAGGTGTTTTCGGTTGGGTTATTAAGCTTGAACGTGCTGCCAATAAAGAAGATTGGGGGGATTTTTTTTAGGGTGGTGAGACTCCAGAGATGAGGAGAGCGTGTTATTCTTCCTATTGTGTTTAAATGCTACGAGGAAACACAACTGCATGTCGGCTTTCAGGCAGTCTGTTTGGATTTCATATGAAGGAATAAAGCTCAGCAATAATTAATTTGTCTTTTCATTGCTCACTACTGAgaaaaactaagaaaaacaacacggtacaaaaaaaaaatccaaaacacaAGTGAAAAAAATGAGGCGGTGATTAACATTGTTGCTTAACAGCAGGAAGGTTTCTAGTTCGAGTCCCAgatgggccagttggtatttctgcatggagtttgcaggTTTCCTCCGGCTTCGctcacagtccacagacatgcgctataggtgaatttaataaactattggccatagtgtatgggtaTGAGCTTGAATGagagaatgtatggatgtttccatgtactgggttgcagctgaaagcgTATCTGCTTCATAAAACATGGTTAAATAGTTGACGGTccattacgctgtggcaacctctgataaatcagagactaagctgaaggaaaatgaaagttGTGAAAGATTAACCTTCACATTCCTAAAGTATATTGTACAACAGCTTCAAAATTCCAAGGCATGAAGGCATCAAGGCATGTCCAAATCCAAATTCTGCTTCACTTCTTGTCTATTGTGCATTCCATTTCTGATCATTTAGCTAGACAAGTTAGTATTGTAGTACTAAGGAAATATTTCGTTTTTTATAGCCAAAAACTCTCATATTTGTTGTGTGATTAAATTGTAATGCAGTCTGTTGATTTTTGCTAAAGTGTACAAACTCTGCCTCTGAGTCACTTGCTAATAGGGCAGCTGTCTGGGCTTGCAGATACacccaatgtttttttattataacagca

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0090131 mesenchyme migration biological_process
GO:0008015 blood circulation biological_process
GO:0060047 heart contraction biological_process
GO:0030175 filopodium cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005869 dynactin complex cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0044297 cell body cellular_component
GO:0030027 lamellipodium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04371 Apelin signaling pathway
ko04926 Relaxin signaling pathway
ko04270 Vascular smooth muscle contraction
ko04812 Cytoskeleton proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-1229 Acts upstream of or within heart contraction. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including cardiovascular system; gut; mesoderm; musculature system; and swim bladder. Human ortholog(s) of this gene implicated in Moyamoya disease; megacystis-microcolon-intestinal hypoperistalsis syndrome; and thoracic aortic aneurysm. Orthologous to several human genes including ACTA2 (actin alpha 2, smooth muscle).

Ensembl:

ensembl_id ENSDART00000177923

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010910 lncRNA upstream 225318 16742395 ~ 16874703 (+) True XLOC_004615
TCONS_00010909 lncRNA upstream 514967 16583373 ~ 16585054 (+) True XLOC_004614
TCONS_00010907 lncRNA upstream 529977 16567854 ~ 16570044 (+) False XLOC_004613
TCONS_00010908 lncRNA upstream 529977 16568492 ~ 16570044 (+) True XLOC_004613
TCONS_00010906 lncRNA upstream 608215 16490198 ~ 16491806 (+) True XLOC_004612
TCONS_00009160 lncRNA downstream 85046 17201527 ~ 17204394 (+) False XLOC_004623
TCONS_00009162 lncRNA downstream 85075 17201556 ~ 17211669 (+) True XLOC_004623
TCONS_00010911 lncRNA downstream 307950 17424431 ~ 17427380 (+) True XLOC_004625
TCONS_00009169 lncRNA downstream 509869 17626350 ~ 17630707 (+) True XLOC_004629
TCONS_00010912 lncRNA downstream 599216 17715697 ~ 17739456 (+) False XLOC_004630
TCONS_00009155 mRNA upstream 56147 17042754 ~ 17043874 (+) True XLOC_004620
TCONS_00009154 mRNA upstream 113053 16967715 ~ 16986968 (+) True XLOC_004619
TCONS_00009152 mRNA upstream 135181 16953415 ~ 16964840 (+) True XLOC_004617
TCONS_00009151 mRNA upstream 148170 16949391 ~ 16951851 (+) True XLOC_004616
TCONS_00009149 mRNA upstream 620730 16452575 ~ 16479291 (+) False XLOC_004610
TCONS_00009158 mRNA downstream 38174 17154655 ~ 17158635 (+) True XLOC_004622
TCONS_00009159 mRNA downstream 85041 17201522 ~ 17323341 (+) False XLOC_004623
TCONS_00009161 mRNA downstream 85067 17201548 ~ 17272732 (+) False XLOC_004623
TCONS_00009164 mRNA downstream 320423 17436904 ~ 17456083 (+) False XLOC_004626
TCONS_00009165 mRNA downstream 323099 17439580 ~ 17456071 (+) True XLOC_004626
TCONS_00009153 other upstream 139240 16960693 ~ 16960781 (+) True XLOC_004618
TCONS_00009129 other upstream 1718207 15381694 ~ 15381814 (+) True XLOC_004597
TCONS_00009115 other upstream 2996215 14102104 ~ 14103806 (+) True XLOC_004585
TCONS_00009106 other upstream 3441877 13658022 ~ 13658144 (+) True XLOC_004581
TCONS_00009101 other upstream 3642665 13457237 ~ 13457356 (+) True XLOC_004579
TCONS_00009163 other downstream 229069 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009172 other downstream 611061 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009175 other downstream 811390 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009179 other downstream 1009177 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009200 other downstream 1482369 18598850 ~ 18598964 (+) True XLOC_004644

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_00839103_00843726.mRNA True 1727 mRNA 0.43 6 CI01000063 838513 ~ 843762 (+)
rainbow trout (Oncorhynchus mykiss) TU1904300 True 1970 lncRNA 0.53 9 NC_048584.1 12619440 ~ 12625090 (+)
bowfin (Amia calva) AMCG00002916 True 2547 mRNA 0.45 7 CM030139.1 6189364 ~ 6193500 (+)