Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009165 |
| length | 1123 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 9 |
| gene id | XLOC_004626 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 17436904 ~ 17456083 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005777 | peroxisome | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0016887 | ATPase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030616-44 | Predicted to enable ATP binding activity. Predicted to be located in mitochondrial outer membrane; peroxisomal membrane; and postsynaptic membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hyperekplexia 4. Orthologous to human ATAD1 (ATPase family AAA domain containing 1). |
| ensembl_id | ENSDART00000189257 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00010911 | lncRNA | upstream | 12200 | 17424431 ~ 17427380 (+) | True | XLOC_004625 |
| TCONS_00009162 | lncRNA | upstream | 227911 | 17201556 ~ 17211669 (+) | True | XLOC_004623 |
| TCONS_00009160 | lncRNA | upstream | 235186 | 17201527 ~ 17204394 (+) | False | XLOC_004623 |
| TCONS_00010910 | lncRNA | upstream | 564877 | 16742395 ~ 16874703 (+) | True | XLOC_004615 |
| TCONS_00010909 | lncRNA | upstream | 854526 | 16583373 ~ 16585054 (+) | True | XLOC_004614 |
| TCONS_00009169 | lncRNA | downstream | 170279 | 17626350 ~ 17630707 (+) | True | XLOC_004629 |
| TCONS_00010912 | lncRNA | downstream | 259626 | 17715697 ~ 17739456 (+) | False | XLOC_004630 |
| TCONS_00010913 | lncRNA | downstream | 260254 | 17716325 ~ 17739456 (+) | False | XLOC_004630 |
| TCONS_00009171 | lncRNA | downstream | 260441 | 17716512 ~ 17739456 (+) | False | XLOC_004630 |
| TCONS_00010914 | lncRNA | downstream | 753800 | 18209871 ~ 18228004 (+) | True | XLOC_004635 |
| TCONS_00009159 | mRNA | upstream | 116239 | 17201522 ~ 17323341 (+) | False | XLOC_004623 |
| TCONS_00009161 | mRNA | upstream | 166848 | 17201548 ~ 17272732 (+) | False | XLOC_004623 |
| TCONS_00009158 | mRNA | upstream | 280945 | 17154655 ~ 17158635 (+) | True | XLOC_004622 |
| TCONS_00009156 | mRNA | upstream | 323099 | 17100021 ~ 17116481 (+) | False | XLOC_004621 |
| TCONS_00009157 | mRNA | upstream | 323850 | 17106117 ~ 17115730 (+) | True | XLOC_004621 |
| TCONS_00009166 | mRNA | downstream | 48488 | 17504559 ~ 17562703 (+) | True | XLOC_004627 |
| TCONS_00009167 | mRNA | downstream | 147457 | 17603528 ~ 17619524 (+) | True | XLOC_004628 |
| TCONS_00009168 | mRNA | downstream | 163996 | 17620067 ~ 17633727 (+) | False | XLOC_004629 |
| TCONS_00009170 | mRNA | downstream | 245554 | 17701625 ~ 17718685 (+) | False | XLOC_004630 |
| TCONS_00009173 | mRNA | downstream | 298788 | 17754859 ~ 17756905 (+) | True | XLOC_004631 |
| TCONS_00009163 | other | upstream | 93913 | 17345550 ~ 17345667 (+) | True | XLOC_004624 |
| TCONS_00009153 | other | upstream | 478799 | 16960693 ~ 16960781 (+) | True | XLOC_004618 |
| TCONS_00009129 | other | upstream | 2057766 | 15381694 ~ 15381814 (+) | True | XLOC_004597 |
| TCONS_00009115 | other | upstream | 3335774 | 14102104 ~ 14103806 (+) | True | XLOC_004585 |
| TCONS_00009106 | other | upstream | 3781436 | 13658022 ~ 13658144 (+) | True | XLOC_004581 |
| TCONS_00009172 | other | downstream | 271471 | 17727542 ~ 17727651 (+) | True | XLOC_004630 |
| TCONS_00009175 | other | downstream | 471800 | 17927871 ~ 17941043 (+) | False | XLOC_004633 |
| TCONS_00009179 | other | downstream | 669587 | 18125658 ~ 18125774 (+) | True | XLOC_004634 |
| TCONS_00009200 | other | downstream | 1142779 | 18598850 ~ 18598964 (+) | True | XLOC_004644 |
| TCONS_00009203 | other | downstream | 1225352 | 18681423 ~ 18699622 (+) | False | XLOC_004646 |
