XLOC_004626 (atad1b)


Basic Information

Item Value
gene id XLOC_004626
gene name atad1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17436904 ~ 17456083 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009164
agaagaagaagaagaagaagaagaagaatgaaGAGGTGGGATGACAGTGTTTAACGTTAGTTAAAATTCTGACCGCTGACAATAAACGGATGTAATAAAAGGAGTCTGCCTGTTAAACCAGTATTTCCTTGACCCAACAGAATAGACATTCCTGGTGAACGTGAGAAGATGGTTTTGAAAGAAATTCCCACAGAAAACATAACTCGCCCTTTGGGCCGGAATGAGGTCATAGGTTTACTCTTCCGTCTCACAATATTTGGCGCTGTCACCTATTTTACAATAAAGTGGATGGTTGATGCTATCGATCCAACAAGAAAACAAAAGGTTGAGGCACAAAAACAGGCAGAGAAACTCATGCGGCAAATTGGAGTGCAGAATGTGAAGCTTTCTGAATATGAGATGAGCATTGCAGCTCATCTTGTGGATCCGTTGACAATGCAGATTACATGGCATGACATTGCTGGTCTGGATGAAGTCATTACTGAACTGAAAGACACCGTTATACTTCCAATCCAGAAAAGGCATCTGTTTGAAGGATCCAGACTTCTTCAGCCACCCAAAGGTGTGTTGCTGTATGGGCCTCCAGGCTGTGGGAAAACTCTCATAGCCAAAGCTACTGCCAAAGAGGCTGGTTTCCGTTTCATCAACCTGCAGCCATCCACTCTCACAGACAAATGGTACGGAGAGTCCCAGAAACTGGCTGCAGCCGTGTTTTCACTGGCCATCAAGCTACAGCCCTCCATTATCTTCATCGATGAGATTGATTCCTTTTTAAGGAATCGCTCAAGTTCAGATCATGAAGCCACGGCTATGATGAAGGCTCAGTTCATGAGCTTATGGGACGGCCTCGATACTGACTACAACTGCCAGGTCATAATAATGGGAGCCACCAATCGGCCACAAGATCTCGATTCTGCTATTCTCCGAAGGATGCCTACAAGATTCCACATCAATCAGCCTAATGTCAGGCAGAGGAAGGACATCCTGAAGCTGATCTTGGAGAATGAGAACGTGGAGTCCGCTGTGGAATTAAGTGAAATTGCAAAGCAGACTGATGGGTTTTCTGGAAGTGACCTTAGAGAGATGTGCCGAGATGCTGCTCTTCTGTGTGTGCGTGACTTTGTTCACCAAGAAAGTCCAGAGGAAGACTTCATCCGTCCCATCAGGCAGGAAGACTTGCAGAGGGCAATCGAGAAAATGAAGAAGTCCAAATCTGCAGGAGTGCATGAGGCATTTATGCAAGTACCACTGGACTAATCCCGATgctgctgttttaaaaaaaa
>TCONS_00009165
TTGCAGGTGAACGTGAGAAGATGGTTTTGAAAGAAATTCCCACAGAAAACATAACTCGCCCTTTGGGCCGGAATGAGGTCATAGGTTTACTCTTCCGTCTCACAATATTTGGCGCTGTCACCTATTTTACAATAAAGTGGATGGTTGATGCTATCGATCCAACAAGAAAACAAAAGGTTGAGGCACAAAAACAGGCAGAGAAACTCATGCGGCAAATTGGAGTGCAGAATGTGAAGCTTTCTGAATATGAGATGAGCATTGCAGCTCATCTTGTGGATCCGTTGACAATGCAGATTACATGGCATGACATTGCTGGTCTGGATGAAGTCATTACTGAACTGAAAGACACCGTTATACTTCCAATCCAGAAAAGGCATCTGTTTGAAGGATCCAGACTTCTTCAGCCACCCAAAGGTGTGTTGCTGTATGGGCCTCCAGGCTGTGGGAAAACTCTCATAGCCAAAGCTACTGCCAAAGAGGCTGGTTTCCGTTTCATCAACCTGCAGCCATCCACTCTCACAGACAAATGGTACGGAGAGTCCCAGAAACTGGCTGCAGCCGTGTTTTCACTGGCCATCAAGCTACAGCCCTCCATTATCTTCATCGATGAGATTGATTCCTTTTTAAGGAATCGCTCAAGTTCAGATCATGAAGCCACGGCTATGATGAAGGCTCAGTTCATGAGCTTATGGGACGGCCTCGATACTGACTACAACTGCCAGGTCATAATAATGGGAGCCACCAATCGGCCACAAGATCTCGATTCTGCTATTCTCCGAAGGATGCCTACAAGATTCCACATCAATCAGCCTAATGTCAGGCAGAGGAAGGACATCCTGAAGCTGATCTTGGAGAATGAGAACGTGGAGTCCGCTGTGGAATTAAGTGAAATTGCAAAGCAGACTGATGGGTTTTCTGGAAGTGACCTTAGAGAGATGTGCCGAGATGCTGCTCTTCTGTGTGTGCGTGACTTTGTTCACCAAGAAAGTCCAGAGGAAGACTTCATCCGTCCCATCAGGCAGGAAGACTTGCAGAGGGCAATCGAGAAAATGAAGAAGTCCAAATCTGCAGGAGTGCATGAGGCATTTATGCAAGTACCACTGGACTAATCCCGATgctgctg

Function

symbol description
atad1b Predicted to enable ATP binding activity. Predicted to be located in mitochondrial outer membrane; peroxisomal membrane; and postsynaptic membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hyperekplexia 4. Orthologous to human ATAD1 (ATPase family AAA domain containing 1).

GO:

id name namespace
GO:0005777 peroxisome cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-44 Predicted to enable ATP binding activity. Predicted to be located in mitochondrial outer membrane; peroxisomal membrane; and postsynaptic membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hyperekplexia 4. Orthologous to human ATAD1 (ATPase family AAA domain containing 1).

Ensembl:

ensembl_id ENSDARG00000056609

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009164 False 1283 mRNA 0.45 10 17436904 17456083
TCONS_00009165 True 1123 mRNA 0.47 9 17439580 17456071

Neighbor

gene id symbol gene type direction distance location
XLOC_004625 NA coding upstream 9524 17424431 ~ 17427380 (+)
XLOC_004624 AL731788.1 coding upstream 91237 17345550 ~ 17345667 (+)
XLOC_004623 rnls coding upstream 113563 17201522 ~ 17323341 (+)
XLOC_004622 ankrd22 coding upstream 278269 17154655 ~ 17158635 (+)
XLOC_004621 acta2 coding upstream 320423 17100021 ~ 17116481 (+)
XLOC_004627 cyth3a coding downstream 48476 17504559 ~ 17562703 (+)
XLOC_004628 pms2 coding downstream 147445 17603528 ~ 17619524 (+)
XLOC_004629 rsph10b coding downstream 163984 17620067 ~ 17633727 (+)
XLOC_004630 CR932017.1 coding downstream 245542 17701625 ~ 17739456 (+)
XLOC_004631 bhlha15 coding downstream 298776 17754859 ~ 17756905 (+)
XLOC_004618 dre-mir-107a non-coding upstream 476123 16960693 ~ 16960781 (+)
XLOC_004615 NA non-coding upstream 562201 16742395 ~ 16874703 (+)
XLOC_004614 NA non-coding upstream 851850 16583373 ~ 16585054 (+)
XLOC_004634 BX005075.1 non-coding downstream 669575 18125658 ~ 18125774 (+)
XLOC_004635 NA non-coding downstream 753788 18209871 ~ 18228004 (+)
XLOC_004644 AL772266.2 non-coding downstream 1142767 18598850 ~ 18598964 (+)
XLOC_004648 NA non-coding downstream 1405195 18861278 ~ 18867975 (+)
XLOC_004660 NA non-coding downstream 1811676 19267759 ~ 19271156 (+)

Expression


Co-expression Network