RNA id: TCONS_00009174


Basic Information

Item Value
RNA id TCONS_00009174
length 2695
RNA type mRNA
GC content 0.38
exon number 8
gene id XLOC_004632
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 17865374 ~ 17875270 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttGTTACTTGTATTGCATTACCATCAGCACTGTCCAAGACTCCTAGACctgattttacataaagctgGCAGAGGCATATACAGTCATATGTGAATTGAATATGACCAGGGGGTCCTATCCCCAATAGTAATAGGCTGAGTGTGTTTGTGGTGTCTGCTTTTACTTCAGTGTGTTCCATTGTGTTAGATGCAGAACTCAAATTCGGAGTATAGGACAACAATCAATACTTTcttttgtatatatacagtacataactACTTtccttatataaatatatatttgttaagaATAAAAAGTGCAACCTTTAGAACTCCAACATTCCAACAACCTTGGGGATTCAGAATAGGGCCATACATTGATTGCTATGGTATATGTAGACTGAGTTCTTGCAACCAGAAAAAGTCAACTCATTGCCATATTTGAGCCAAGATAAAGTATTGTGAAGCGCATCACTAGGCCAAACAGATCTTGATATATAAGTAGATTATTTAACAGTCTGGGATTTAATGTAGCCATTTCTTGCATGTCCTCTTGGAAAGCCATTCAGAAGCCTTTAGCGAAATGGGTTTGTGAATTAGTCACATCTCTGCATGAATTATATTTGCCGTGACAGCACAACACATATCATTATTCATATGAGCATAAGGTTTCAACACGTGAACATGATTTCAAGCCTTTACCAAACAACATGAAAGACTTAAAATGCTCACTCAGTCACACTCGAGTCACAAGCTGTTTATTTGGAGATCTGTGCTGAAGAGTCCACATGGACTGGATCCGGAGTGTTCTGGTTCACACCTTTCTCTCACTGATTTCCTCTCTTGCCTTTGGGATACCAGAAGAATCCCCTCATCATCAGTTATCTGGAAATGTCAAAGGAAAGCTTATTTTCCATCAGATGGAAGGGAATTCAACATACTTGCGCAAAACAGGGAATCTGGCATCTTACACTAAAACAGTGGTTTCATTTGAACTCTATGACCCGAGGCATATCCTGCGCTCTGTCTCTTTTACATACACATGGGATTTGGGCAATGGGGAAGTGCATAAAGGCCCAGAGCCTTTTGTGAAGTTTTACTACGCCTTACCAGGGAACTACACGTTAAAACTGAGCATTGAAACAGATGCACCTCAGCATTCCAGGATGACAGGCCTGTACTCGGTAGATCTGACTGTATTAGATGCTATTAGATACGTTGATCTGATAGGACCTGTGATTTATAACGTCGACCAAAACAGCAGACTGTCCTTTGAGGTTGGAGGAAGCCCTCCGGTTTGGCTGTGCTGGAGAGTTTTGCCTGATTGCCACACACCCAATCCAGCTTCCTGCAGTTTAGTCCAGATCTATGAAAACACTTTCTGTCTGAACTACACTTTCACATCTGTAGGAACGCACTGCTTAGACCTGAGTGTGAAAAATAACATCAGCAGCCTCCAGACATTCTACAGCATCTATGTGCAAAGCGGTCATGTAAGTCTCTTCTTCCTATTGCCCTGCGCTGCAGTGATTGTTGCGACCCTCATATTTATCTTTGTGACCGTGTGTCGTCCACGCCAGCGGTCTCTCATGTGTAAGGGAGATTATGTCTCCTTCACAGACATCGAACTGCGTGCAAAGGATGCCACCGTCCCTTTGCAGAGCAATTCTTCTGCATCTAAGACAAATGAAACCCAGCTTCTGCTTTATCAGCAAGGGCCTTCCTACAACCCAGAATCCTGTTAGTCTCACACAAGATGTATTCATTAAAACAGATCTTTCATTGCATTATTTTGCTGTATGGTCTAACTTTTTATATTTGACACAAACAAGCATTGTGAATAAACACAAAATAGAACCTCTAAAAGCTTTTCACTTAGCTCATCTGAGTCACTCTGTCAATATGAACACATTCATGCTCCTTCTGCtctttttgtttacatttgaaaAGGTTTCAGGGTTTGATTCATGCAGGCTGCATTTGCTAATGTGAGAATTGTTTTTagattttgggttttttttttttaattgtctaatgaatacagaaaacatccaaaaagcacttttatgtgtttttttgtctGAGCCATACATCTCCATTTCAGCAGTACTTACATACACCAAACAGTTGTATTTAGTATTTGGTAGGTAGTTACaggatgtacactgtaaaaaatgtccagAATTTTacaacatgttactgtaatttttcacagtaaagtTTCACAGTAATGTGTTGTATTCAaagttttattgtgaaattatggCAGGTTGCATGGTTACAGCAGATTACTgtaaaaagggctatatcttttgcatgtTATTTATAGGAAGTCAAACTCTTTTGATTTCATTTAGCATAGATATTAACACAAATGAACTTTAATGCCAGTGTTGGCACTTTTTGGATATTTAGAAATAACATAATGTTATTGCAGCTCCAAAAACAATTTGGTTACATcttcaaaaataactttaaaagatAAAATCATCCTGTTTTGAAACGACATGAATGTCATAGTAAATTGAATTTGGTAAATTTTGCTATGTAAATTTAAATTGGGTGCACTCCACCTTTATTTAGTTTTCTAAGGTTAACATGGGaatgttaatacattttaatgaacataactttgCCCTTAgctaaaaacataataaactggaacaaaagtaaatgatttataaagccaaacactgttaaacacccaaaatgacTT

Function

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-23 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TMEM130 (transmembrane protein 130).

Ensembl:

ensembl_id ENSDART00000169019

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010912 lncRNA upstream 125918 17715697 ~ 17739456 (+) False XLOC_004630
TCONS_00010913 lncRNA upstream 125918 17716325 ~ 17739456 (+) False XLOC_004630
TCONS_00009171 lncRNA upstream 125918 17716512 ~ 17739456 (+) False XLOC_004630
TCONS_00009169 lncRNA upstream 234667 17626350 ~ 17630707 (+) True XLOC_004629
TCONS_00010911 lncRNA upstream 437994 17424431 ~ 17427380 (+) True XLOC_004625
TCONS_00010914 lncRNA downstream 334601 18209871 ~ 18228004 (+) True XLOC_004635
TCONS_00009195 lncRNA downstream 668522 18543792 ~ 18544621 (+) False XLOC_004641
TCONS_00010915 lncRNA downstream 986008 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009224 lncRNA downstream 1264073 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010732 lncRNA downstream 1392489 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009173 mRNA upstream 108469 17754859 ~ 17756905 (+) True XLOC_004631
TCONS_00009170 mRNA upstream 146689 17701625 ~ 17718685 (+) False XLOC_004630
TCONS_00009168 mRNA upstream 231647 17620067 ~ 17633727 (+) False XLOC_004629
TCONS_00009167 mRNA upstream 245850 17603528 ~ 17619524 (+) True XLOC_004628
TCONS_00009166 mRNA upstream 302671 17504559 ~ 17562703 (+) True XLOC_004627
TCONS_00009176 mRNA downstream 52601 17927871 ~ 18105116 (+) False XLOC_004633
TCONS_00009178 mRNA downstream 58505 17933775 ~ 18104154 (+) False XLOC_004633
TCONS_00009177 mRNA downstream 58505 17933775 ~ 18104154 (+) True XLOC_004633
TCONS_00009180 mRNA downstream 359287 18234557 ~ 18343653 (+) True XLOC_004636
TCONS_00009181 mRNA downstream 482812 18358082 ~ 18362422 (+) True XLOC_004637
TCONS_00009172 other upstream 137723 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009163 other upstream 519707 17345550 ~ 17345667 (+) True XLOC_004624
TCONS_00009153 other upstream 904593 16960693 ~ 16960781 (+) True XLOC_004618
TCONS_00009129 other upstream 2483560 15381694 ~ 15381814 (+) True XLOC_004597
TCONS_00009115 other upstream 3761568 14102104 ~ 14103806 (+) True XLOC_004585
TCONS_00009175 other downstream 52601 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009179 other downstream 250388 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009200 other downstream 723580 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009203 other downstream 806153 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009243 other downstream 1510156 19385426 ~ 19385555 (+) False XLOC_004666

Expression Profile

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