RNA id: TCONS_00010732


Basic Information

Item Value
RNA id TCONS_00010732
length 909
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_004660
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19267759 ~ 19271156 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTAAAACCAACAAATGGACCATTGTGTCGTCCTTCATTCTTTCACCGTTAGCGTCTCAGTCAACCAAGATTTTGTCCCAATAACACTGCATCATGATACTCATCTCCATCCTTCAGCTGAAATTCAGAGAAGTAATAATTCACTGGCAGACTCAGACGGTCTGGTTGTTATGTGGTTACTGGAGCAACAGGACTTTTGGAGGACCAGGCCGGAGCCTGCGGCTGCTGGGCTGCTGTGTGTGAAGGCCTGTCGCTCTGTGGCTCTGTGCCCAGCCACCACTCCGGAAAATTCCTCGCTAAGGGTCAGCAGTGGAGAAATAGTCAAAGCCATATACAGCCATTTTACTAACTGCACCGTTAAATGTTACCTCGTTAAATGCGTTTGCTGAGGAATGCAAGTCGAGGGATGCACATTTATGTGGTTCAACATTATGAATAAATCTCGCATTTGTCTTTTCTTGCTGACAAACATTAGACTAAAAACTAAATCAGAGGAATTGCATTTGGTTTGTGATTTGTGTGAGAAACGCTGCAAAAAACGACTGTGTGGTCTGTTGATTTTGCTCATCTGGCACTGCGTCATCTGCTTTATAAGACTTTCAGTCTGTTAATGGGAGGCTTTGTTGAGCTTGATGTTACACACACTTAACAAAACATTGGCATTTGCCATTTATAAGAGCCCTTAGAAGTGCTGTAAGGTTTCCCTAGCTAACAAAGGCTGCCAAAGGCCACCAGTgcattttcaaatattatttaaaccaaAAACGCTTGTTCTGACAGATGCCAACAAATGTGCAACATGATGTAAACAATGGATCCAAAAGTAACATCTCATATAGAGGGTTTACCCAATTCTTtttatttgctgttaatttatccAATCCTTCCATAAGATGACATTTACTTAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009224 lncRNA upstream 127108 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010915 lncRNA upstream 399784 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009195 lncRNA upstream 723138 18543792 ~ 18544621 (+) False XLOC_004641
TCONS_00010914 lncRNA upstream 1039755 18209871 ~ 18228004 (+) True XLOC_004635
TCONS_00010913 lncRNA upstream 1528303 17716325 ~ 17739456 (+) False XLOC_004630
TCONS_00009244 lncRNA downstream 114282 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010733 lncRNA downstream 187653 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00010916 lncRNA downstream 992429 20263585 ~ 20265465 (+) True XLOC_004675
TCONS_00009263 lncRNA downstream 1072733 20343889 ~ 20346635 (+) False XLOC_004677
TCONS_00010917 lncRNA downstream 1072743 20343899 ~ 20346635 (+) False XLOC_004677
TCONS_00009232 mRNA upstream 34762 19208338 ~ 19232997 (+) True XLOC_004659
TCONS_00009231 mRNA upstream 35383 19205086 ~ 19232376 (+) False XLOC_004659
TCONS_00009230 mRNA upstream 63315 19199735 ~ 19204444 (+) True XLOC_004658
TCONS_00009228 mRNA upstream 68988 19191787 ~ 19198771 (+) False XLOC_004657
TCONS_00009229 mRNA upstream 69160 19193560 ~ 19198599 (+) True XLOC_004657
TCONS_00009233 mRNA downstream 10033 19281189 ~ 19301988 (+) True XLOC_004661
TCONS_00009234 mRNA downstream 34234 19305390 ~ 19321087 (+) False XLOC_004662
TCONS_00009235 mRNA downstream 34300 19305456 ~ 19318374 (+) False XLOC_004662
TCONS_00009236 mRNA downstream 49501 19320657 ~ 19340220 (+) False XLOC_004662
TCONS_00009237 mRNA downstream 49517 19320673 ~ 19340220 (+) True XLOC_004662
TCONS_00009203 other upstream 568137 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009200 other upstream 668795 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009179 other upstream 1141985 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009175 other upstream 1326716 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009172 other upstream 1540108 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009243 other downstream 114270 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009245 other downstream 116987 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009249 other downstream 595842 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other downstream 606686 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009270 other downstream 1227827 20498983 ~ 20499080 (+) True XLOC_004679

Expression Profile

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