RNA id: TCONS_00009235


Basic Information

Item Value
RNA id TCONS_00009235
length 2314
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_004662
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19305390 ~ 19340220 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAATGACATCATTTCTGTGAGAAGTGCGCTGCGATACAAACAAGGGAGGCTGCCGCTCGCTAGCCCGCTAATGCAAGTAGGTCAATCCTCGTGCTGAGAAATAAAATCGAGGATTTGAAAACCTGAGGAGGAAAAGCAGAGGTTGGGATTACATTTGTGATGAGACCTTTAAAAATTCGCTTGCACTCTTCGCTGTCCAGGGTCCTGTCTTACGAGCGCAAGCCTGTCAACCAGCCCCACTTTTCCACCACCCTCACGTTAGGCTGACTCTAAGGAAGAAATCATGGAGTTGCGTGTTGGAAGTAAATATCGCCTCGGGCGAAAGATCGGAAGTGGCTCCTTTGGTGATATTTACTTGGGTGCAAACATCACATCTGGAGAAGAGGTAGCCATTAAGTTGGAGAGCGTGAAGACTAAACATCCACAATTACATATTGAGAGCAAGTTTTATAAGATGATGCAGGGTGGAGTGGGTATTCCCTCCATCAAATGGTGTGGTGCTGAAGGGGACTATAATGTCATGGTGATGGAGCTCCTGGGTCCGAGCTTGGAGGACCTGTTCAACTTCTGCTCAAGGAAATTCACACTTAAAACTGTCCTGCTGCTGGCAGACCAGATGATTAGCCGAATTGAGTACATCCACTCCAAGAACTTTATTCACAGAGACATTAAACCAGATAATTTCCTGATGGGGCTTGGCAAGAAGGGAAACCTAGTCTACATCATAGACTTCGGCTTGGCCAAAAAGTACCGTGATGCCCGCACACATCAGCACATTCCCTATCGTGAGAATAAGAACCTGACTGGTACTGCCCGCTACGCCTCCATTAACACTCATTTGGGCATTGAGCAATCTCGACGGGATGATCTTGAATCCCTTGGCTATGTACTTATGTACTTCAACTTGGGTTCTCTTCCCTGGCAAGGCCTGAAAGCAGCCACTAAAAGACAGAAGTATGAGCGAATCAGTGAAAAAAAGATGTCAACCCCCATTGAGGTTCTTTGCAAGGGCTTTCCGTCGGAATTTTCAACCTACATGAACTTCTGCCGCTCACTCCGATTCGATGACAAGCCTGACTACTCCTACTTGAGACAGCTGTTCAGGAACCTTTTCCACAGACAGGGTTTTTCCTACGACTATGTGTTTGACTGGAACATGCTGAAATTTGGCTCTAGCAGAACAGCTgaggagaaagagaaagagcAGAGAGGAGAGGGAGAAGAGAGGGATGAGAGGACTGGAGGTGGACCGCCGGGTTCTGCGGCTCGTGCTTTGCCCTCTGGCCCAAACCTCCCAGCTCCCAACAGGGTCCGCAATGGCCCAGACCCTCCCAGCTCCACACCTGCCTCCCGTGTACCTCAGTCTGgAAACGCATCGCCGAGAGCAGGCCGAGGAGCCGAGCGGGAAAGGAGAGTGTGTTTACGGCTGCACCGCGGCGCTCCTGCCAACGCCTCCCCTGATCTCCCACTCCGTCATGATCAGATCCGCATCACTCCCCCACAGGTCAGCGTTCCATTCGAACACATGGGGAAATGAGCTCTGCAACATCTCTGTCATTTACTGTTTTTAGGCggATTACAACTGACAACTCCcctaaaacatttatattcatcTTTCTATGTAAAACGGGAGTGTGACACAGAGGCAAGAAGCAGAAGGCAAGAAACCACATTTTTGTAATGGACAAGTGCTCCCCCGTCCTCACGCACTGCAGGTTGAAGAGACATGGCAGATACAGACGCATGTGGACAGTGGATACGAGGATCACGAGACTCTCGCGAAGTGGAAAAGAGAATTTCTACCGACAGCCTGGTGAAGGTTATTCTGGTTGTTCTCTGTTTTGTCTGAAATGCTGGGAAAAAAAACGAAGGACTTGCTTGTTGGACTGTAAAGTTTCAAATGAATATTGATAGAATGTAACAAATGTATCCCTCGCACTGTTACTTTAACACACAGAAAGTGTTGTATGTTGACACCTTACTGACGTATGAGGTTTTTCGTGGAACCGTCTTtacatgttaaatattaaatatgcaaaAGTAACCAATTTCCCAGAATGTTGTTTCCAGTCAAACTGGTGTTTGGACTGCAGATGTCACTCAATGAATGTGTCATGATTGTGCATTGGAGGTATTGTTGTCAGCGTTGGCCATAGTAAACTAACCTAAAGATCAATTTGAGCATTAATATTAAAGGCCTGAATTCTACTCAAAGCCAAACAATGTGGTGGACTGAAACTTTTAAGTGGAGACTCCTGCATTGACATTAGCCATGACAACctcatttataaataaacacacatatcAAAGTA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006897 endocytosis biological_process
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway
ko04340 Hedgehog signaling pathway
ko04341 Hedgehog signaling pathway - fly
ko04390 Hippo signaling pathway
ko04391 Hippo signaling pathway - fly
ko04392 Hippo signaling pathway - multiple species
ko04068 FoxO signaling pathway
ko04710 Circadian rhythm
ko04711 Circadian rhythm - fly
ko05010 Alzheimer disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko01001 Protein kinases
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-7873 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including peptidyl-serine phosphorylation; positive regulation of canonical Wnt signaling pathway; and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; eye; notochord; and otic vesicle. Human ortholog(s) of this gene implicated in invasive ductal carcinoma. Orthologous to several human genes including TPTEP2-CSNK1E (TPTEP2-CSNK1E readthrough).

Ensembl:

ensembl_id ENSDART00000066391

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010732 lncRNA upstream 34300 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009224 lncRNA upstream 164805 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010915 lncRNA upstream 437481 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009195 lncRNA upstream 760835 18543792 ~ 18544621 (+) False XLOC_004641
TCONS_00010914 lncRNA upstream 1077452 18209871 ~ 18228004 (+) True XLOC_004635
TCONS_00009244 lncRNA downstream 67064 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010733 lncRNA downstream 140435 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00010916 lncRNA downstream 945211 20263585 ~ 20265465 (+) True XLOC_004675
TCONS_00009263 lncRNA downstream 1025515 20343889 ~ 20346635 (+) False XLOC_004677
TCONS_00010917 lncRNA downstream 1025525 20343899 ~ 20346635 (+) False XLOC_004677
TCONS_00009233 mRNA upstream 3468 19281189 ~ 19301988 (+) True XLOC_004661
TCONS_00009232 mRNA upstream 72459 19208338 ~ 19232997 (+) True XLOC_004659
TCONS_00009231 mRNA upstream 73080 19205086 ~ 19232376 (+) False XLOC_004659
TCONS_00009230 mRNA upstream 101012 19199735 ~ 19204444 (+) True XLOC_004658
TCONS_00009229 mRNA upstream 106857 19193560 ~ 19198599 (+) True XLOC_004657
TCONS_00009236 mRNA downstream 2283 19320657 ~ 19340220 (+) False XLOC_004662
TCONS_00009237 mRNA downstream 2299 19320673 ~ 19340220 (+) True XLOC_004662
TCONS_00009238 mRNA downstream 30164 19348538 ~ 19353771 (+) True XLOC_004663
TCONS_00009239 mRNA downstream 38249 19356623 ~ 19362186 (+) True XLOC_004664
TCONS_00009240 mRNA downstream 43961 19362335 ~ 19383945 (+) False XLOC_004665
TCONS_00009203 other upstream 605834 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009200 other upstream 706492 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009179 other upstream 1179682 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009175 other upstream 1364413 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009172 other upstream 1577805 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009243 other downstream 67052 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009245 other downstream 69769 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009249 other downstream 548624 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other downstream 559468 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009270 other downstream 1180609 20498983 ~ 20499080 (+) True XLOC_004679

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_02225053_02232182.mRNA True 1361 mRNA 0.46 8 CI01000063 2224887 ~ 2232182 (-)