XLOC_004675


Basic Information

Item Value
gene id XLOC_004675
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20263585 ~ 20265465 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010916
ACCCTATCCCCCTCTTTTCCTCCTTCTCCAGAGGGAAATCTCcagaactacctgatcttgtaCCCCTCGTCGTccaggtgggagccctgggctcaattatctcagaGCTTAGGGTTCTCTCTCGGGATAGCATGCTAAACCTGctaatattatcaagcaatatctaagtgagATCTCTTGAAAGTAAGTGTCACACTGTAAGTAATTTCTGCTGCATTAGATCAATTCCATTTAATTCTGACATCAAACTTTTAAATAGCAGAACTTTATATGCGCATTTGAGTTATCCTACCTCTTGATGGTCTGTGAGATGGAGGGTTTGCGCAGGACTGAGGGTCTGCGACAGCCGTTGATGTCAACTGGCGGGCATCTGAGCTGAATATTTTCAGTGGGCACACTGGCACTCCGCAGTGGGGATGTCCAGTCTGAGCCAGGGCGGCTTCTTTCTCTGCAGGCTGTCATTCCTGCTCTCATCCTCAGCATCGGCCATGTCTGCCGCCCCTCCCCTTACCAGCCAGCTGTAAGATCAAGCAGGGGCAAATAAGCACAAGTGAACAAATATGGGTGAAcaatacacccacacacacacaaaacagcaatGCCTTACATAAGACACACCACCATAATCCGTATTTCCATCTGGTTGTTGTGACATGATGGTCCAGTGCAGAGTTCAGTTACAGAAAAATGACAGACGCTTTTGTGCTCTTGGGACTCATAGCCGCTTTTTGCCATTAAATCACCCACTATGATTGCATATATAAGCAGTAATACAGTAATTCAGGATTTTCATGTGGTGAGAGGAATGTCACCTGCTGTCAAAACGAAGGTTTCATCCAATggccatttacatttttgttgaataTTTCAAGTTTTAGACCAAGAATTAATGTAGTAAGACTGTAATGTGTAGTAAGACATACAGTGCCTACTTGAATGCTTATTATTGCCTTATATATTGTGTCTTTATATTGTAAGAAACAGCAAAGGTGCATACttaattttatcttttaatattattgttttaaagggacagttcacccaaaaatgtaaaatctgtcataatttacttgccctttacttgtttctaaatctgtatgattttctttcttctgttgaacattaaataatatatttaagaaaaggctggaaacctgtaactgctgacttctattgtatttgttttgctactgtgaaagtcaatggttatggGTTTCagattttttctaaatatcttaattaaaaaaataagtacttAATCAAAACCTTTTTAATTTTGGGTTCACTATTTCCACTTGTCGGTGTAAACTATCATTTACTCGCTCTCATGTAAAGATctcaaaaagaagaaagaaactcacataGGTTTTAAACAAGGATAAATAAATGGAGGCAGAGTTTTAATTTTTTGGGAAACTATTACTTACGTTTGTTTTTTAATCTTCATTTCTGAATGAAAACTTCTTGATATTTTGCCCATAGGTCTCTGTTTGCTGTCATGTGactgaaaataaaaactataaattcATGATGGCCTATTAGTGTGATTTAGTTTCTTAAAAAATGAACTGTGACCAACTGTGTGCCCCAATGTCTCCAGCAGAGGATGCAAAGTCACCTATTAtccactgtttgtttatttaaagcagTATGCTGTGCTTAAGGAACTGCCTTTGCTCATTCCTTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010916 True 1688 lncRNA 0.38 2 20263585 20265465

Neighbor

gene id symbol gene type direction distance location
XLOC_004674 mgrn1a coding upstream 106571 20122256 ~ 20157014 (+)
XLOC_004673 mrtfba coding upstream 218484 19976400 ~ 20045101 (+)
XLOC_004672 ercc4 coding upstream 288212 19958845 ~ 19975373 (+)
XLOC_004671 cpped1 coding upstream 330962 19866865 ~ 19932623 (+)
XLOC_004669 snx29 coding upstream 604329 19408373 ~ 19659256 (+)
XLOC_004676 zgc:163057 coding downstream 70605 20336070 ~ 20337274 (+)
XLOC_004677 hbae5 coding downstream 76986 20342451 ~ 20353541 (+)
XLOC_004678 arhgap17a coding downstream 146828 20412293 ~ 20482061 (+)
XLOC_004679 NA coding downstream 226154 20491619 ~ 20504801 (+)
XLOC_004680 si:zfos-754c12.2 coding downstream 240732 20506197 ~ 20508359 (+)
XLOC_004670 NA non-coding upstream 804300 19458809 ~ 19459285 (+)
XLOC_004667 BX649366.2 non-coding upstream 875312 19388143 ~ 19388273 (+)
XLOC_004660 NA non-coding upstream 992429 19267759 ~ 19271156 (+)
XLOC_004648 NA non-coding upstream 1395610 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 1664621 18598850 ~ 18598964 (+)
XLOC_004689 NA non-coding downstream 541432 20806897 ~ 21106987 (+)
XLOC_004691 FO704814.1 non-coding downstream 1171881 21437346 ~ 21437458 (+)
XLOC_004694 NA non-coding downstream 1492352 21757817 ~ 21799396 (+)
XLOC_004695 NA non-coding downstream 1752481 22017946 ~ 22019770 (+)

Expression


Co-expression Network