RNA id: TCONS_00009228


Basic Information

Item Value
RNA id TCONS_00009228
length 2117
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_004657
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19191787 ~ 19198771 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACAAAGCTGCTTAAATCTTTGTAATGACTCTGTGTTGTTTTTAGATTGAAAATACACTGGGCAAATGACTGTATTAATGTTCGAAAAACAGCCAAACAAGAgttcaaattaaacaaataattccACTGTCCGGTAATTTTACCTCATTTCCCATGAGTAAGAGCCTTGTCGGGCATTACAGCTAATTAGTAGGAAGTTTGGGAAAAAGAAGGCGGTGCACCAGAAGGTTTATTTAGCAGATTATTCTTAAAAGTAATTCATATGTATGTGGCTCGCTTGATGACACAAGACTTGTTTATCTATATTAAATCCATGATGTTTATTAATGGGTTTACAACTACTTGAAGAGATTTTGAGAGATATATAAGTCTGAGCAGCTATGGGAGGTATTGTAGAAGATCGAGAGACGGCAGGTGCCCCAGATGGCGGATGGGGCTGGGTTGTTCTTTTAGGAGGTTTTGTCATCACTGGCTTCTCATATGCCTTCCCAAAAGCTATAAGTGTTTATTTCAAAGAACTGATGCATGACTTTGGCTGTGGATATAAAGACAcagcctggatttcatcaataatATTGGCTATGCTCTACGGTTCAGGTCCCATTTCCAGCATCATGGTCAATAAATTTGGATGCCGTCCAGTCATGTTGGTTGGAGGATTATTGGCCTCACTTGGGATGATAAGTGCATCTTTTGCTACCAGCATTATCCATCTTTACATCACTGCGGGTGTCATCACAGGTCTTGGACTGGCATTGAACTTCCAACCATCACTGATTATGCTGGGGGCTTATTTTGACAAGCGCAGACCACTTGCCAATGGACTGGCGGCAGCTGGAAGCCCCGTATTTCTGTCAGCCCTGTCTCCGCTAGGACAATTACTGCTCGATCAGTATGGATGGAGAGGAGGCTTTCTCATTACCGGTGGTCTTCTGCTCAACTGCTGCACATGTGGTGCTGTTATGAGACCCCTGAAACTTAAAGAAAGGAAAGCCTGTAATCAAGAGCTGAAGGAAATGCTGCCTCCTGAGGCTGGACAGGAGAATATAGTTTGTGAAAACAATAACGATAAACAGCCCAGTAAAAAGAAGCTTCTGGACTTCAGCGTACTTCGTGACAAAGGGCTTATTATCTATATTATTGCAAAATTTATAGTTGTTCTTGGTTTATTTGTTCCGACTATTCTCTTAGTCAACTATGCTAAGGACCAAGGAGTGCCTGATAAGGAGGCTGCCTTTTTGTTGTCTATTATTGGATTTATTGACATCTTTGCTCGTCCTACTTGTGGCGTTGTGGCTGGTTTAAAATGGGTGCGACCCAAGATGTCATATTTCTTCAGCCTGGCCTTGCTCTTCAATGGCCTGACAGATGTGTGTTCAGCTACGAGCACAGACTACAAGGGGCTGATTATCTTTTGTGTGTTTTTCGGCCTGTCTTATGGCATGGTGGGAGCTCTACAATTTGAAGTGCTAATGGGTATTGTGGGAACAAGCAAGTTTTCTAGTGCACTAGGCCTAGTGCTCCTCTTTGAGGCAGTGGCTGTGCTGATTGGACCTCCCTCTGCTGGCTATTTGGTGGATAAATACAAGAACTATGAACTGATTTTTTACATGGCTGGCGGAGAGCTGATCACTGCTGGAATATTTCTGGCCCTTGCTTCATTCTGCTGTATTAGCCAAAAGAAACGCAAAGACTCGCCACAAACACAGCAGACAGATGTGGAAGTCAATCCTGAAAGATAAACAGTAGagagatgtttttgtttttgcagtggGACATTTTGTTTAGCTATTTATGTTATTGTAATGATTGTCTTGTTACATGAGCGTATTTAGATTTTCTAATTCCTGcatattaatttgtattatttcacaAATCAGTGAGAACATATTTGATTATGGTTCAACGAATAAAATGTCTAAGGTAATAAAATGAAAAGCAAGAGTGCCATGTTATTAGAAacgttattttatatttatgttgctTTGATATTCtgtatgtatgtaatgtaatataaatactTTAACATGGCCTAACAGTTAGGCCCTGTTAGATTATGTGttgctatgtatatatatatattgtgggcggagtaatacacaaagggtaaagaggc

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008028 monocarboxylic acid transmembrane transporter activity molecular_function
GO:0015129 lactate transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-121128-1 Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC16A8 (solute carrier family 16 member 8).

Ensembl:

ensembl_id ENSDART00000152892

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009224 lncRNA upstream 51136 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010915 lncRNA upstream 323812 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009195 lncRNA upstream 647166 18543792 ~ 18544621 (+) False XLOC_004641
TCONS_00010914 lncRNA upstream 963783 18209871 ~ 18228004 (+) True XLOC_004635
TCONS_00009171 lncRNA upstream 1452331 17716512 ~ 17739456 (+) False XLOC_004630
TCONS_00010732 lncRNA downstream 68988 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009244 lncRNA downstream 186667 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010733 lncRNA downstream 260038 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00010916 lncRNA downstream 1064814 20263585 ~ 20265465 (+) True XLOC_004675
TCONS_00009263 lncRNA downstream 1145118 20343889 ~ 20346635 (+) False XLOC_004677
TCONS_00009226 mRNA upstream 108 19188561 ~ 19191679 (+) False XLOC_004656
TCONS_00009227 mRNA upstream 1586 19188572 ~ 19190201 (+) True XLOC_004656
TCONS_00009225 mRNA upstream 1622 19188542 ~ 19190165 (+) False XLOC_004656
TCONS_00009223 mRNA upstream 48095 19138452 ~ 19143692 (+) False XLOC_004655
TCONS_00009222 mRNA upstream 48200 19138452 ~ 19143587 (+) False XLOC_004655
TCONS_00009230 mRNA downstream 964 19199735 ~ 19204444 (+) True XLOC_004658
TCONS_00009231 mRNA downstream 6315 19205086 ~ 19232376 (+) False XLOC_004659
TCONS_00009232 mRNA downstream 9567 19208338 ~ 19232997 (+) True XLOC_004659
TCONS_00009233 mRNA downstream 82418 19281189 ~ 19301988 (+) True XLOC_004661
TCONS_00009234 mRNA downstream 106619 19305390 ~ 19321087 (+) False XLOC_004662
TCONS_00009203 other upstream 492165 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009200 other upstream 592823 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009179 other upstream 1066013 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009175 other upstream 1250744 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009172 other upstream 1464136 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009243 other downstream 186655 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009245 other downstream 189372 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009249 other downstream 668227 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other downstream 679071 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009270 other downstream 1300212 20498983 ~ 20499080 (+) True XLOC_004679

Expression Profile

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