XLOC_004638 (noxo1b)


Basic Information

Item Value
gene id XLOC_004638
gene name noxo1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18445604 ~ 18454422 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009182
TGTTTTCCCCACGGCGCTCCCTCAACTTACTTTAAACGCTCACGTGACAAAAACAACACGCCCATGTCTGGAGGCTTTTATATAAATGATGCGGTTGATGCTGATGCTGAAAGAGAAGAAAGGAAAGATTTCTTACTGTAGTTACATCCGTCAAATACTGCGTGTGCTACAGTATGAGCGACCCGCGCTTTCCTGTCGACGTCCACCTTATTGGAGTGATGAAGAAGGAAAAGGACAAAAAGTACATGACATCCGTGTTGTGGTCAGACCAGAGTGAACTGATAGTGTACAGATCTCTCAGAGACTTTCGGACGCTGCACAGGCAACTGAAAAAGAAGTTTCCCGTCGAAAAACCGTATCGTAAAGAAGACAGGGTGCTTCCTAGATTTGGAGCCCAGGTCATGAAGTCTACTTTTCAGCTGAAGGGTTTGGATAAGTCTGTGTCTCGTCTGAGGAATCTGGAGAAGTACTGTTCCAGCTTATTGCAGTGTGACACAACTGTGTCAAATTCCAGAGAGGTGATCCAGTTCTTTCTGCCAACTGAACAGGAGTTGCTGCCAGAATATACACAAAACAGTGTAATGATTCTGCAATCAGACAACATCCCCACTGCTCACGGAGGACCTGACCTGCAGAAAAAAAGTTTGAGCAATGGAAATGTGACCCAGCCTTTTGTATCCAAGGCATATCAATGCGTAGCTCCATATGAGACCAAAGACACAAAGAACAAGCCCTTTAAAGTCGCAATCGGCGAAAGACTGGATGTGCTCATTAAAGACAGAGCAGGTTGGTGGCTTGTAGAGAATGAGGATAAACATTTAGCTTGGTTTCCTGCTCCTTTCTTGGAATTATGTGATGGGGAAGAGGAAGAGGATGAGGATGAGTATAACTCAGTGACCTGTGAAATGTCTCTGTACTGCGCGACAAGATGTTATACTTCTAAAAAAGAGGACGAGCTCTCACTGAGCATCGGTGCTGTTGTGGAGCTGTTGCAGAGGTCTGATAATGGTTGGTGGCTTGTTAGATATAACAATACGGCTGGTTACGTGCCCTCCATGTACCTAAAGCTCTACAGCAGCCCCAGTTTTGGCCTTCAAACACTTCAGAGGAAACTTCACAGCTCCACCATCAACCTGTCTACCAGCAACTCTCCCAAACCAGAGCCCCAGCGAAACAGAATCAATCGTTTCCTTAAGTCTAGCTCCCTAGAAATCCTGTCAGAACCTCAGAGTCACTTCACCGATCAAGTGCAGCGTCAAGAGTCCGGCAGCTTCAGCGATGATGGAACCGACTTCAGCTTCAGCTCTTCAGACACCACCTCCATGAGCCCAAGCATGTCCAGCTCAGAAGAAGATGAGGGCCCTCTGATACGGCAGGATAAAGAGGCGGACAGCAGCGATAGCGCTTTGTCCAGTGGTCAGTCCAGTCCTGTCAACTCTGACACTGGACATCCGATGAAGGGAGTCGGAGCTCCAAAGGTCCCACCCAGACCACAAACTCGAGAGATCCTACAGCGCTGCACCACCTACACCCGTAAAGCTGCTCTAGCAACATCTGTGCGACTGGCTCCTGAAAGACAAGTCATGGTAGATGGAGGAAGAGCTTGAAAGAATGAAATGAAATCCTTTTACTCAATCACTGTTAAAAAGGGTTTCTAGTTTACAACATGCTTTGCGTCAGATGCCAGGAAAATAAATGCTGGAAGTGTTATTCTGTGTGTTCTGCATGCGATTAACACAGTGAGATGTAAATTAGTCTGTGATTTTGTAGGCTTCTGTTATGAAGAAATTTGTTGGCGAATATTTAAGACTTTACACTTCATGATCCACAACTGTAGTCATGTAAGTGTTTTACAAATAGTCTTTTTGAtagttacattaatattattgCAAACTAACATCTAATCATAAAGATGGGAGTTTATCTGAAATTTATGCAAACATATTGCAATGACTTgtttattctattctgttctgtgttcttgtttgttatatattatgcatAACCTGTTGGATGTAGTTACTGtttacatattgtaaaaattcatagtttcattaatgttatattaatgttataGTCTTTTTGTCAAGTTTATGGTATTCCACACTGGAAAAGGTTTTGTCTGGATTTTTGCTTAACTTCATACgttttaataaatgtttcctACGA

Function

symbol description
noxo1b Predicted to enable superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Predicted to be active in cytoplasm. Orthologous to human NOXO1 (NADPH oxidase organizer 1).

GO:

id name namespace
GO:0006801 superoxide metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016175 superoxide-generating NAD(P)H oxidase activity molecular_function
GO:0016176 superoxide-generating NADPH oxidase activator activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101203-1 Predicted to enable superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Predicted to be active in cytoplasm. Orthologous to human NOXO1 (NADPH oxidase organizer 1).

Ensembl:

ensembl_id ENSDARG00000056374

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009182 True 2169 mRNA 0.43 8 18445604 18454422

Neighbor

gene id symbol gene type direction distance location
XLOC_004637 FOXL3 coding upstream 83182 18358082 ~ 18362422 (+)
XLOC_004636 fam20cb coding upstream 101951 18234557 ~ 18343653 (+)
XLOC_004635 NA coding upstream 217600 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 coding upstream 319830 18125658 ~ 18125774 (+)
XLOC_004633 trrap coding upstream 340488 17927871 ~ 18105116 (+)
XLOC_004639 rnf151 coding downstream 4080 18458502 ~ 18464975 (+)
XLOC_004640 neurl2 coding downstream 70531 18524953 ~ 18527221 (+)
XLOC_004641 msrb1b coding downstream 74806 18529228 ~ 18571563 (+)
XLOC_004642 CT009714.1 coding downstream 102507 18556929 ~ 18592444 (+)
XLOC_004643 grid2ipb coding downstream 124175 18578597 ~ 18656238 (+)
XLOC_004625 NA non-coding upstream 1018224 17424431 ~ 17427380 (+)
XLOC_004624 AL731788.1 non-coding upstream 1099937 17345550 ~ 17345667 (+)
XLOC_004618 dre-mir-107a non-coding upstream 1484823 16960693 ~ 16960781 (+)
XLOC_004644 AL772266.2 non-coding downstream 144428 18598850 ~ 18598964 (+)
XLOC_004648 NA non-coding downstream 406856 18861278 ~ 18867975 (+)
XLOC_004660 NA non-coding downstream 813337 19267759 ~ 19271156 (+)
XLOC_004667 BX649366.2 non-coding downstream 933721 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 1004387 19458809 ~ 19459285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01500129_01504142 NA coding CI01000063 null 1500037 ~ 1504470 (+)