XLOC_004639 (rnf151)


Basic Information

Item Value
gene id XLOC_004639
gene name rnf151
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18458502 ~ 18464975 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009183
GCTTGTATCCTCTAGAGCAGCAGCCATTGAAGTTCAGCGGTTTCCATAGCAGTGCCTTTGTCTGATAAGTAAAACCTAGATGTTACCAAAATAGAGTCCCAGTGGCTAGTGTCAAAAAGTTGTCAGGTGCTAACCACATTTGTCACTTGTGCTAGAATGGAAGAGAAGAGAAGATTGGACATCTGCGATGCATTTCTGAATGATCCCGGGTCAAGTGATCTTCTTTGGGATGTTTTGCTGCGTGTTGTGATGACCGATGTCTGTCTTTTTAGCTCTCTGAATTATTCAGCATCTGTATCAGCCGTGTGCTTAAAAGGCAACAGAAAATgACTGGAGGTTATGAAGTGGATCAGTTTGTGGATCCTCCAGATGATGATCTGATTTGTGTCATCTGTAGAGCTGTTTTACGCTGTCCTGTACGGCTTAAATGCAACCATGTCTTCTGCAAGGAATGCATTTTACAGTGGATGAAAAGACAGGTGAAATGCCCATGCTGTAGGCAGTCAATCGACCAGAACCAAATGCTGGTTTTGTTTAAGCTGAGCAAATCCATTGGCCGTTTATCAGTGAAGTGTCGAAATGGACAGCAGGGCTGCAGGGCGACTTTCCCGCTTTCTAATGAGTACCTCCACATCTCCACCTGTCCTTATGAGTGGCAGATTTGTCCTCATGAGGGCTGCGGGCAGCAGGTGTTGAGGAAGGACGTACAGGCGCATGATCAGAGCTGCACTCACTGGAGACAGCTGTGTCCCATGGGCTGCGGGACGCTGCTCGTCCGAGAAAACCAGACCCAACACAACTGCTACAGAGAGCTGCAGCAACGCTACTTAGCTGAGCGTCGGAAGCAGAGAGCCATCGCAGCCAACCTGCGCAGGAAGATGCAGCGCATGCAGAGCCGCATGGCCCAAATAAAGAGGCAGATTAACCTGATGTGTGAGAGCCTGGAGGTCGGAGATCTGGAAACAGAAGCAGGCGAGGGAACCAGTGCATGGACAGATGCTAGTCCAAGCAGCAGCAGACACAGACACACTTACAATTCAAGAATTCGATTTATATAGTTTCAAAAGGGTCCAGAATTCAAACAATCAAAAGTGAGTTGTTTTATGTGTGCACATTTTATGATTAAATGTGTCTTTGCACTATTAGAATGATcttaaaggatagttcacgcAATAATGTTTACTCATAGTAATGTCAgtccaaacctgtatgactgCCACTCTCTCATTCGCTCACTCAATT

Function

symbol description
rnf151 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF151 (ring finger protein 151).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-121214-234 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Orthologous to human RNF151 (ring finger protein 151).

Ensembl:

ensembl_id ENSDARG00000075046

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009183 True 1242 mRNA 0.46 4 18458502 18464975

Neighbor

gene id symbol gene type direction distance location
XLOC_004638 noxo1b coding upstream 4080 18445604 ~ 18454422 (+)
XLOC_004637 FOXL3 coding upstream 96080 18358082 ~ 18362422 (+)
XLOC_004636 fam20cb coding upstream 114849 18234557 ~ 18343653 (+)
XLOC_004635 NA coding upstream 230498 18209871 ~ 18228004 (+)
XLOC_004634 BX005075.1 coding upstream 332728 18125658 ~ 18125774 (+)
XLOC_004640 neurl2 coding downstream 59978 18524953 ~ 18527221 (+)
XLOC_004641 msrb1b coding downstream 64253 18529228 ~ 18571563 (+)
XLOC_004642 CT009714.1 coding downstream 91954 18556929 ~ 18592444 (+)
XLOC_004643 grid2ipb coding downstream 113622 18578597 ~ 18656238 (+)
XLOC_004644 AL772266.2 coding downstream 133875 18598850 ~ 18598964 (+)
XLOC_004625 NA non-coding upstream 1031122 17424431 ~ 17427380 (+)
XLOC_004624 AL731788.1 non-coding upstream 1112835 17345550 ~ 17345667 (+)
XLOC_004618 dre-mir-107a non-coding upstream 1497721 16960693 ~ 16960781 (+)
XLOC_004648 NA non-coding downstream 396303 18861278 ~ 18867975 (+)
XLOC_004660 NA non-coding downstream 802784 19267759 ~ 19271156 (+)
XLOC_004667 BX649366.2 non-coding downstream 923168 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 993834 19458809 ~ 19459285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01506279_01508184 RNF151 coding CI01000063 null 1506279 ~ 1508931 (+)