RNA id: TCONS_00009221


Basic Information

Item Value
RNA id TCONS_00009221
length 924
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_004654
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19036380 ~ 19065298 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAACGGAGGACAAAGGAAAAACGGCGGCGCCTCGGGGTTTACCGGAAATAGAATGCCTTTCAGGAACAATAACAACCCATAGCAATCTGAAcagcaataacaacaacaataacaacaacaaagacAACGAGGGAAGCGAAGGAGCAACGACGACCACCTCGACAGATGTTGAATCCACTGGCGCTGAAAATATCATCGGAAACGGTTCAGCTGTTAATACCACCGGAGGAAATAACGGCAAATGGGTCCGTCTCAACGTCGGGGGGACGGTGTTTCTCACGACACGACAGACGCTGTTAAAGGAACAAACTTCATTTCTGTATCGACTGTGTCAACAGCAGGACTTGCATTCAGATACGGATGAAACTGGTGCTTATGTGATCGACCGAGACCCTACTTATTTTGGTCCCATACTCAACTATCTGCGACATGGAAAGCTGGTTTATAACAAGGAGCTGGCAGAagaagGTGTGCTGGAGGAGGCAGAATTCTACAACATCACACcgctgattaaattaatcaaagagAGGATTCTTGAACGCGACTCAAAGGCCACGCAGCAGGTACCGCCGAAGCATGTGTATCGGGTGTTGCAGTGTCAGGAAGAGGAACTGACCCAGATGGTGTCCACCATGTCGGACGGCTGGAAGTTTGAGCAGATGGTGAACATTGGCTCATCTTACAGCTACGGAACGGAGGACCAGGCTGAATTTCTCTGTGTGGTGTCAAAAGAGTTACACACCTCGGCTGGAGGTTTGGGGACCGAGCAGAGCCACAAAACTAAGACGTCGGACACACAAGAGGAGGATGGAGCGAGGGAGGaagaggaggtggaggaggaggagcggGAAGAGGGAGAGAGAAATTCATCCCCCAATGAGTGGATTAGAGATTAGCAGAAACTTGAGTCAAAGGAATTG

Function

GO:

id name namespace
GO:0045724 positive regulation of cilium assembly biological_process
GO:0051260 protein homooligomerization biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0097602 cullin family protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130531-80 Predicted to enable cullin family protein binding activity. Predicted to be involved in positive regulation of cilium assembly and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein homooligomerization. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in myoclonic dystonia 26. Orthologous to human KCTD17 (potassium channel tetramerization domain containing 17).

Ensembl:

ensembl_id ENSDART00000181060

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010915 lncRNA upstream 168493 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009195 lncRNA upstream 491847 18543792 ~ 18544621 (+) False XLOC_004641
TCONS_00010914 lncRNA upstream 808464 18209871 ~ 18228004 (+) True XLOC_004635
TCONS_00010913 lncRNA upstream 1297012 17716325 ~ 17739456 (+) False XLOC_004630
TCONS_00009224 lncRNA downstream 80574 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010732 lncRNA downstream 208990 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009244 lncRNA downstream 326669 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010733 lncRNA downstream 400040 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00010916 lncRNA downstream 1204816 20263585 ~ 20265465 (+) True XLOC_004675
TCONS_00009219 mRNA upstream 821 19030391 ~ 19035647 (+) True XLOC_004653
TCONS_00009218 mRNA upstream 938 19029285 ~ 19035530 (+) False XLOC_004653
TCONS_00009217 mRNA upstream 45290 18971100 ~ 18991178 (+) True XLOC_004652
TCONS_00009216 mRNA upstream 47972 18970893 ~ 18988496 (+) False XLOC_004652
TCONS_00009215 mRNA upstream 54808 18970838 ~ 18981660 (+) False XLOC_004652
TCONS_00009222 mRNA downstream 79683 19138452 ~ 19143587 (+) False XLOC_004655
TCONS_00009223 mRNA downstream 79683 19138452 ~ 19143692 (+) False XLOC_004655
TCONS_00009225 mRNA downstream 129773 19188542 ~ 19190165 (+) False XLOC_004656
TCONS_00009226 mRNA downstream 129792 19188561 ~ 19191679 (+) False XLOC_004656
TCONS_00009227 mRNA downstream 129803 19188572 ~ 19190201 (+) True XLOC_004656
TCONS_00009203 other upstream 336846 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009200 other upstream 437504 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009179 other upstream 910694 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009175 other upstream 1095425 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009172 other upstream 1308817 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009243 other downstream 326657 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009245 other downstream 329374 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009249 other downstream 808229 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other downstream 819073 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009270 other downstream 1440214 20498983 ~ 20499080 (+) True XLOC_004679

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_02404812_02415053.mRNA True 1319 mRNA 0.45 6 CI01000063 2404142 ~ 2415053 (-)