XLOC_004668 (si:dkey-16i5.8)


Basic Information

Item Value
gene id XLOC_004668
gene name si:dkey-16i5.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19401854 ~ 19402950 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009246
CTGTACTCTCTTCATGATGCATCTGAACAGACGGGCTGCAGTGTAGTCCAATACTTCAATTCAAAAAAGGACACCAATATACTAACTTTTCAGCTATGGAGAAAAAATATCCTGGAGTTGGACGCTGTAAATGTGCATTCTGGTTTGCTGTTTTTCATGACATTTTTGGACTGTTTGTCCTCTTAGCAGGGGTGTTCTGGGACATCTTTTTCCATGACTTTTTAATTTATGCCGGAGCCGTGATCATTTTCTTGAGCTTGATCTGGTGGGTGTTTTGGTACACGGGGAACATTGAAGTGCCTCCTGAAGAGCTGGAGGACGACATTGTTCAGTACAAACGCAATGCCAAAGGAATTTCGGGCGTCATGCGTAAAGTCTCCAGCAGTCTTTCCAATGGATTGAGGAACTCGTTCAGGAGAAATGGACGAATCAACAATCAAGCTGAAGGCTCAAACCGCATGGCTAGAGCAGATCTACCTGTCACCATTGCCATGAGCTCTTATCTCAGTTCACAACAACCTGAAACCACCAACCAGCTCAACCGTGATCCTTTAATGATATAACATACAGATTCCTGGACTCCTATTGGCCAGGACAGAGAATCAAATAAGACTTATCTTTTGCAAACTTTGCTCGACATTGAATGTCAGGCTCTGATTTGCATCTGAATTCCCACAGTGCTTTGCATGGAGACCCTACTCTTCACATCTGTGCCGCCAGTTGACTTGATTCATATATCTACAGGATCATTAGTGGATATGTTTATCTATAATCTGCTCATTTACATGACCATATGTTGTTATAATgcaatattatttgttatatgggTTGTTGACAATGTTGCATTTTCACTGtcacacatgacaaaaaaaaagaaaataattagtatTTTCACCATTTAAAATCcagtaaatggttaaacatttcTTTCTAAGAAGGATCTCGTTATAAAATCTgctgttaa

Function

symbol description
si:dkey-16i5.8 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1207 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000096722

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009246 True 964 mRNA 0.40 2 19401854 19402950

Neighbor

gene id symbol gene type direction distance location
XLOC_004666 rsl1d1 coding upstream 7886 19384615 ~ 19393968 (+)
XLOC_004667 BX649366.2 coding upstream 13581 19388143 ~ 19388273 (+)
XLOC_004665 gspt1 coding upstream 17909 19362335 ~ 19383945 (+)
XLOC_004664 dmc1 coding upstream 39668 19356623 ~ 19362186 (+)
XLOC_004663 tomm22 coding upstream 48083 19348538 ~ 19353771 (+)
XLOC_004669 snx29 coding downstream 5423 19408373 ~ 19659256 (+)
XLOC_004670 NA coding downstream 55859 19458809 ~ 19459285 (+)
XLOC_004671 cpped1 coding downstream 463915 19866865 ~ 19932623 (+)
XLOC_004672 ercc4 coding downstream 555895 19958845 ~ 19975373 (+)
XLOC_004673 mrtfba coding downstream 573450 19976400 ~ 20045101 (+)
XLOC_004660 NA non-coding upstream 130698 19267759 ~ 19271156 (+)
XLOC_004648 NA non-coding upstream 533879 18861278 ~ 18867975 (+)
XLOC_004644 AL772266.2 non-coding upstream 802890 18598850 ~ 18598964 (+)
XLOC_004635 NA non-coding upstream 1173850 18209871 ~ 18228004 (+)
XLOC_004675 NA non-coding downstream 860635 20263585 ~ 20265465 (+)
XLOC_004679 NA non-coding downstream 1088669 20491619 ~ 20504801 (+)
XLOC_004689 NA non-coding downstream 1403947 20806897 ~ 21106987 (+)
XLOC_004691 FO704814.1 non-coding downstream 2034396 21437346 ~ 21437458 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location