AMCG00014982


Basic Information

Item Value
gene id AMCG00014982
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 41704455 ~ 41724237 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014982
cgagcaGCAAAATGGCCGCACGTCTATCGACTGACTTCACAGCGTTTTAGAAACACGAAGAGATCCCGCAGTTGCGTTTATATtggaaacacaaaagcaaagagAGTCGCTCCAGTTTGTACCGATCCGTGTGGGAGAAGAAGGACATTTTGTCGCCTGTGCCGCTTGCTCGCCGGGGTGTGTTcttgttcatgtatttgttttccgcGAATGCCTCAAGAAAACTCAAATTCCGCACTAAAGCACTTTATGATTTGTATGTAATTCCTGAGAGAGGAGTATCAGGAAAGGGAGCTGCAGTTCATGGaagacaagaaaagaaaaaaagaagataaaagaaaaagggaagcTGCCCAGAAGGTTGCagagcaaaaaaacaaagTGCCAGAGTTGACCAAGCCGCTGTCAGTCCAGTCTCCGGCCACCCCCagctccacctcctcctcctcctcctcccccagccctggcccccctccctcctcctccgccgCCCCTGCTGCCGCCGCCGCTGCCCCCCCCCAGGGCGGGAACAATGCCAAGCGACCAGCGGTGCCCAACGGTCAGCCCCCCAACACCCAACCCCAGCGCTACGTGGCCAGGGAGGTGCCCCCCCGCTTCCGCAGCCAGCAAGACCACAAAGTGCTGCTGAAGAGGGGCCAGCCCCCCCTGTCCTGCATGCTCCTGGGGGGGGGCGCCCCCTCTCTCAGCCCTGGTGACGCCCCCAATGCAACCACCATAGCAGCCAGTCCCACAGGATCAGCTGCAGCTGCCGATGCTCCTGCtgcttcctccccctcctccacctcaatcactgctgctgcttctattcctccttcttcttcctcttcttcttcaaattatgcaaattcCATGTGGAGGGCCAGCTCGGGCAGCCTGGCCCCCTCTCAGGGCTGGGAGAAGGTGATCGTGGATGAATCAAATATGGAGGAGTGGCCGAGCATAGGAATgggagtggggggagacggagGAGGGGGAGCCAGCAGCGGTGCTCCCCCCCCATCGGAGACCCACAGTGGCAGTCACCCAAACAGTGCCTCAAGGAACGACAGAAGCGTGggaacaggaggaggaggaggagggggagtgggAGGGGTGGGGAAGGTGCCATCTTCACCTTCCCCCGGGTCCTCCTCCTCCAACGAATGTATGCAGGGCGGGGCCGGGGGTTTGACGGCGGCAGCGGGGAGTGCCTGGGCCCcccaccaccagcaccaccaaAAGCCCAAGCCCCCGCACCTCTCGGCCTTCTCCGGGAGCCAGGATGCCGGCGCGGGGGCTGCCGTCAGCGGTGAGGTCTCTGCAGACTGGAAAGTGGCAGCTGGAGGAGGCGGCggcagtagtagtattagtagtgcCAACTTTCACCCCAACGCCAACCCCTCGGCCTGGCCAGCTCTAGTGCAACAGGAGGCTGGGGCTGAGGGGGCAGGGGGAGGAGGTGGGATATCTCCTTCCCCCACCTCCGCCAgcccctccccttcctccctcaATCCTTCCCTCCATTCTTCCGCTGTGAATTCTGCCACCCATCACTATCACCATCAACCACCACCACACAGCCAACACAACCCCCAGCTTCAGCCCATCCCAGGCAGGGATCGCCACAGAGGGGACTGGCCCCCCACTGGGCAGCAGGAGCAGGGACCAAAGCTACCGGGCCCCCCAGGAGAGGGGCCAGActgtgggggaggaggaggaggaggaggaggtatGGTGGCTGAGActtcccactctctctctggatCCTCTGCGAATTCTTCTTCATCAACGTCGTCATCTTCTTCCTGGAGGGCGGCTTCTTCGCACTCGAAGCCAGGCTCTGCTAGGACTGATCCTTGGGAAGGtagaggtggaggaggagacgcagggggaggagggggcgaCATCTCCCTGTCCTGGGGTAACCAGGGTAGCAGCCAGGAAGGGAGACCTGGAGAGGGGCTTGGGGGAAGAGTTTGGGGTTCGGGTAGTGGGGGCAATTGCAAAACCCCCGGGGTATCTCAGGGAgcgtggggtgggggggcaggggctgCGGGTGAAGAGGGTTCGTTGGGGGAGTGGGGCAATTCTTCggagggggcagggggtggCGGCGGAGGCAGTAGcggaggcagcagcagcagtcacgGCAGTGGTGGTGGGCGGGGCAGTGGTAGCAGCGTAGCCAATCAGGAGAGTGGGAACACAGCCAGCCCCGCCCCCACCCCGCCCCTCACCAGAGCGTGGGACAATCAGAAAGCGAGGGAGGAGTGGGGGACGGGCAGGAAcgaaggaggagggagagggggaggagccggaggtggaggtggaggtggaggaggggtAGCCCAGGGCTCCCAGTCGTCGTCATCCTCCTCTTCCAGTGGGGGGCGCTCCAGCGGAGGGGCaggaaggggaggagggggaggaaacAACCACAATCAAACCGCCCCTTCCTCTTCCACCTCaaacccccaccaccaccaccgcccccccccccagctgaaCACCCCTGAAGTGGCCTTACAGCACCTGCTGAGCAGAGCTGACCTGGACCCCCGAGTGCTGTCAAATTCGGGCTGGGGTCAGACCCAGATCCGGCAGAACGTAGCCTGGGATGtggagggaggtgggggtgcCTCtactctctcctcttcctctttatcatcatcatcatctaatTCTTCTGCTGCTGGGGTGGTTACCATAGCAGCTGCCACCCCCCTGCCTCCCAGCCCTGCCAGTCCTCTTTCCTCGCCCACAGAGCCTGCCCAGCGCGGGGCCAACACACTGCCTGCACTCAGCCAGCCGTCGCCCAAGTCCCCCGCACCTGGCCCTCACACCCGCCCCGTCGTCCCTGTCATAATCATCCTCATCTTCATCCACAGACGCAGGGTCAGGGATGGGGAGGGGAGGGGCAGGATTGGAGAgagcgaggaagaggaggaggaggaggaggagcaggcggtggtggtggtggaggtggaggagcaggaggagcaggaggaggaggaggcggggGGTACCGGAGGAGGGGGTGTTGGAGGCTGGGGGTCCAGCCAGGAGGAGAAAGGGataggaggaggtggaggagcaGGGGGCTGGAACGAGGGGGGCTGGAGCCAGAGAGTGAGCAGTGGAAGTGGGAGTGGCGGTGGGAACGAGTGGGGTGGAGAGCGTGAGCCCAAGCCAGGCCCAGGAGGGGGAGGTTGGGGTGAAGGGAAGGGAGGCGCAGGAGGCGACGCAGGCTGGGGCAGCTGGGACGAAGGAGGGGCCAGGAGAGGCTGGGGTGGAGGTGGCGGAGGAGGCGGCGGAGCCACAGGGGACAAACAGCACCCAGGCTGGAGCAAACAACCAAACCAGATACCAAACAGTCAACAGTCACTGAAGATGCCAGGGGGCAActcacagcaacagcagcaaccaCCACCACCCATGGAGTCCTCGGCTTCACAGGGAAGCTGGGGCCGGACTGGGGggccttcctcctcctcttcctcctcttcctcgtccCTCCAGAGCCAGAGCCACACGTCGGGCTGGACCTCTGGCCCGATCCCGCAGGTGGGGGAGCTGGCGGGGCTGGAACCCAtttgggGCAGCAGCGCCCCCTCTGGTCCTGCAGTGGATAATGGGACAGCCGCCTGGGGAAAGCCCACTGAAGCCCCGACTGGCTGGGGAGACCCAGAGGATACTGGGAAGGCGGTGCCTGGCTGGGGCAACccctcccccaaccccctcAAATCTGgttCCAAGTCTATGCAAGAGGGCTGGGGAGAGGCGGAGGCCAGTGTGAGCGCCTCCCGCCACTCCagctgggaggaggaggaggagggagggggcgTGTGGAGCAGCACCGGCTCCCAGGGCAGCAGCTCCTCCTACAACTCGTCTGGCTGGGGACAGGGCCCCCCAGGCAAGAAAACCGGCAGCAAGggCACTCTGAAGGGTGGAGGGGGTGACTCCTGGATGGCTCCAATCTCCAGACAGTTCTCCCACATGGGGCTTCTGGGCGATGACCCCGGGGGCAGACCCATGGACCTGGCCCCCGGCCCTCCACCGCTGGACAAGAAGCTGGAAGGGGAGAAGCGAGGGATGAACCTGAGTGACTTCAACGGAGAGATGCGAAAGGGAGGGAGGGCTCCCTTCCGATCGCCCAGTTCCAAAGAGGTGGGGTCTGGGGAGGCCGGGCCTTACTACGAcaagccgGGCAGTCACAGTGTGTTTGGTGGCAACAGTGGGATGGCTCAGTCTCGTGGGATCCACCAGGCTGGGGTGCCACCCCTAAACCCGTCCCCAGGGATACGAGCTCAAGTGCCTCCTCAGTTCCTGTCGCCTCAGGTGCAAGCCTCAGTCTTGAAGCAGATGCCGGCCAGCAGTGGGCTGGGGGGGGGTGTGTTTGGGGTGGGGCCCCAGCTCTCCCCTCAGCACCTTGCCATGCTCAGCCAGCTGCCCCACATTCAACAGCAGTTCCATCTGGCGTGTCAGCTCCttttacagcagcagcagcagcagcagcagcagcaacagctcctgcagaacCAGAGGAAATTCCCCCAGAACCTCCGGCAGCAGCCCGACCCGCAGCAGTTGGCTAGAATGATGTcagctctgcagcagcagcagcagaggcaGCAGCAGGGAGGGGGGGGCTCCAAGCTGTCCCCCTCCCACCTGGGTGGGGGAGCCCCCAAGACCCACATGTCTGAGCCCCTCCCTCACCCTGGCCTGGGTGGGGGCCTGGCTGACCTGCACCCCAAAACTCAGGCTGGGGGTTACAGCGggtTCGGCTCGGGGGTGTCCCTACCAGGCTTGGAGCTTGGTTCGATGGTGGGGGGACCCGGTGGTGGCAGCGGGGGAGGGATGAAGGAGGTGGGGGGCCAGTCTCGCTTCAGACAGTGGACAGGCCTGATGGAGGGGCTCTCACCAGCCACCTCCCCCCCCAACACTGGCCTGCACAAGAACGgtCCTATTGGCGCCCCAGGGAAGCTGCGGGGGGGGTCTCCATACTCGCACTATGAGCTGGAGGGTCTGGGTGGGGCTCCAGGTGGGGGTGGGGACAGCTGGCTCCCACACCGCCCTCCGCCCAACAAACTGCCCACCAAGACTGGCTCCTCCAGCTGGCCTCCAGAGTTCCAGCCCGGGGTGCCGTGGAAGGGGATCCAAAGCGCTGACCCTGAATCTGACCCCTACATGACCCCGGGCAGCGTGCTGGGCACCCCAGGGCCCCCAACCCTCACAGACACTGAGCACCAGCTACTGAGAGACAACACAGggTCTAGCCCCTCCCTCAACACCTTGCTGCCTTCACCCGGTGCCTGGCCCTACAGTGCCTCAGACAGCCCCCACAGCAACGCACACAACTCCGGTTCCCTGAAGTACTCCGAGTACAAGCCCAGCTGGCCCCCCGACCCCATTGGACACAACAAACTCTGGAAGACCAATCGCAACTCCTCTCAGATGCCCCGCCCCCCGCCCGGCCTCACCAATCAGAAGCAGCCCTCCGCCTCCCCATGGGCCGGAGGAAACCCGCGATTGGCCAGGGGCTGGGGAGGGGGCGGTGGACAGGACTCCAGATATGGGCCAGGCTCTCCCTGGAGTGACGGTGGGGCGAGGGGTAGCTGCTGGCTGGTGTTGAACAACCTTACTCCCCAGattGACGGGTCGACTCTGCGCACTATCTGCATGCAGCATGGCCCCCTGTTGACCTTTCACCTCAGCCTGACCCAGGGCAGCGCTCTGATTCGCTACAGCTCACGCCAGGAGGCAGCCAAGGCCCAGAGTGCTCTGCACATGTGTGTTCTGGGCAACACCACGATCCTGGCAGAGTTTGTGAGCGAGGAGGAGGTCACTCGCTATTTTGCACATTCTCAGGCAGGTGGGGGTGGCCAGGGTTCGACAGGGACTGGGGGGGGAGCCGGAGGAGGAGGCGGTGGCAGCAACACCCCCGGgagcgagcgagagagggagcgagagagaggaggaagtgGAACAGCTGGAGGGAGCTCTCCTTTAACAACAGGAGggagcaacagcagcagcaatggAGGAGGTGGGGGCGGGGGTCCGGGTTCGAGTGGCGGCTGGCAGAGTCTGGATGGGACAGGCAGCTCTCAGGATGGCTCTTCCCCACAAGGACCCGGGCTGAGCATTTTCGCGCAGTGGAGCAgtaatggagga

Function

GO: NA

KEGG:

id description
K18412 TNRC6, GW182; trinucleotide repeat-containing gene 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014982 True 6180 mRNA 0.64 22 41704455 41724237

Neighbor

gene id symbol gene type direction distance location
AMCG00014983 csnk1e,LOC103143618,LOC101067908,LOC103468446,LOC107096663,LOC106915477 coding downstream 5767 41690877 ~ 41698688 (-)
AMCG00014985 NA coding downstream 14472 41688553 ~ 41689983 (-)
AMCG00014984 NA coding downstream 17010 41674784 ~ 41687445 (-)
AMCG00014977 NA coding downstream 188990 41488889 ~ 41515465 (-)
AMCG00014975 dmc1 coding downstream 234903 41463594 ~ 41469552 (-)
AMCG00014987 NA coding upstream 55949 41780186 ~ 41796064 (-)
AMCG00014994 NA coding upstream 91500 41815737 ~ 41822547 (-)
AMCG00014993 sh3bp1,LOC107690072,LOC107734168,LOC107692101,LOC107554025,LOC107584210,LOC107731399,LOC108273824 coding upstream 103872 41828109 ~ 41837721 (-)
AMCG00014992 LOC107591697,LOC107720054,LOC102309547 coding upstream 121622 41845859 ~ 41849769 (-)
AMCG00014991 NA coding upstream 241827 41966064 ~ 41968712 (-)
G75145 NA non-coding downstream 31413 41651336 ~ 41673042 (-)
G75144 NA non-coding downstream 32145 41670156 ~ 41672310 (-)
G75064 NA non-coding downstream 253122 41450090 ~ 41451333 (-)
G75035 NA non-coding downstream 294843 41406917 ~ 41409612 (-)
G75032 sox10,LOC106607141,LOC106601158,LOC107104518 non-coding downstream 298656 41405462 ~ 41405799 (-)
G75170 NA non-coding upstream 88096 41812333 ~ 41815261 (-)
G75241 NA non-coding upstream 253518 41977755 ~ 41991977 (-)
G75247 NA non-coding upstream 269326 41993563 ~ 42022081 (-)
G75333 NA non-coding upstream 443287 42167524 ~ 42167876 (-)
G75364 NA non-coding upstream 562057 42286294 ~ 42286584 (-)
AMCG00014978 NA other downstream 142488 41538286 ~ 41561967 (-)
AMCG00014971 NA other downstream 229974 41470294 ~ 41474481 (-)
AMCG00014964 kdelr3,LOC108262534,LOC107679478,LOC106607138 other downstream 372685 41329313 ~ 41331770 (-)
G74945 NA other downstream 534904 41169041 ~ 41169551 (-)
G74890 NA other downstream 770501 40931797 ~ 40933954 (-)
AMCG00014981 NA other upstream 31369 41755606 ~ 41766826 (-)
AMCG00015010 csdc2,csdc2a,LOC105919973,LOC108235856,LOC103382071,LOC101165181 other upstream 336053 42060290 ~ 42063901 (-)
G75272 LOC105025081,LOC108431941,LOC108274116,LOC107734154 other upstream 395050 42119287 ~ 42131232 (-)
G75370 NA other upstream 567684 42291921 ~ 42292295 (-)
AMCG00015023 NA other upstream 596859 42321096 ~ 42325005 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004661 tnrc6b coding NC_007123.7 CM002896.2 19281189 ~ 19301988 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_02234891_02253083 NA coding CI01000063 null 2233613 ~ 2253083 (-)