RNA id: TCONS_00009241


Basic Information

Item Value
RNA id TCONS_00009241
length 3772
RNA type mRNA
GC content 0.43
exon number 13
gene id XLOC_004665
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19362335 ~ 19383945 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACTCGAGAGACACAGCCCCTGATTCCTGGGAACAGGAGGACGATGTTGAGGCCACGGCTGATACCGAACTTCAATCCGCCTTCACCGGGCTCAACGTCAACGCTCCGGAGTTCGTCCCATCCTTTCTTTCACGGGGTCCACCGGAAAACGCCACGTCTGATGGCACCGATGTAGTGGCCAGCATGGAGATCTCGGAGCCAGTGGGTGCGGTGGAGAATGGAGAAACAGATGCCAGCGCGGTGGAGACGTGGGAGCAGAAAGGAGAGCCGGATAAAGAGGAGCCAGGAGGTGGATCACCGGCAGACACTGGATGCTTTGGAGATGAAGCGCAGGATGAAATGATGGAGGAGGACGAGGAGATGCCCACCCCCAAACTGCCTCCTCCTCCACCGGACGCCCCCAAGAAAGAACACGTGAATGTTGTGTTCATTGGACATGTGGATGCAGGCAAGTCTACAATTGGTGGACAGATTATGTACCTAACTGGTATGGTGGAAAAACGCACGCTGGAGAAATATGAACGGGAGGCAAAAGAGAAGAACAGAGAGACTTGGTATCTTTCCTGGGCTCTAGACACAAACCAAGAGGAAAGAGACAAGGGCAAAACAGTAGAAGTTGGAAGAGCATACTTTGAAACAGAGAAAAAGCACTTTACTATTCTTGACGCCCCGGGCCATAAAAGCTTTGTCCCCAACATGATTGGAGGAGCATCTCAAGCTGACTTGGCAGTGCTGGTCATCTCTGCCAGAAAGGGTGAGTTTGAGACGGGTTTTGAAAAGGGAGGTCAGACGAGGGAACATGCCATGCTGGCCAAAACAGCTGGAGTCAAACATCTGATAGTCCTCATCAACAAAATGGACGACCCCACTGTGAACTGGAGCTTGGATAGATATGAGGAATGTAAAGAGAAGTTAGTGCCATTTCTAAAGAAAGTGGGATTTAATCCAAAGAAAGACATTCACTTTATGCCCTGTTCCGGACTGACGGGAGCAAACCTGAAAGAATCATCTGACTTGTGTCCCTGGTACACGGGATTACCATTCATTCCACATCTGGACAGCCTGCCAATCTTCAGCAGATCAAGTGACGGTCCCCTCAGATTGCCTATTGTGGATAAATACAAGGACATGGGCACGGTAGTGCTTGGGAAACTGGAATCTGGAAGTATCGCAAAAGCACAACAACTTATTATGATGCCAAATAGGCACACGGTGGAGGTGTTGAGTCTCCTCTCAGATGATGTGGAGACGGAATACGCGGGGCCGGGTGAAAACCTGAAGCTCCGGCTCAAAGGCATTGAGGAGGAAGAGATTCTCCCAGGCTTTATCCTATGCAACGCTGAGAACCTCTGCCACTCAGGACGCACTTTTGATGCCCAGATTGTCATTATTGAACACAAATCCATCATATGCCCAGGTTACAATGCAGTACTACACATCCACACCTGCATAGAAGAAGTGCAGATTTCAGCGTTAATCTGTCTGGTGGACAAAAAGACAGGAGAAAAGAGCAAGACTCGTCCACGCTTCGTCAAGCAGGACCAAGTATGCATCGCCCGTCTCAGGGCCGCAGGAACTATCTGCTTAGAGACTTTTAAAGACTTCCCTCAGATGGGACGCTTCACCTTGAGAGATGAGGGTAagatgttaaaaattaaatatgaaatcaAAAGACCCCAATTTTGTTTAAACAAAGTATACATTTTCAAGTAAACCATGCCAAAAGTACGAATGTGTCTCATTCAGCACCCTTGTTCAGTAGTCAGTACACTGATCAGGTCTCCACCATTTTAAGTGCTGTCTCAATAATGCTTATTGATGTGCCCTGATTTTCAGGACACTGAAAGAATTTTCTTATGCTTTTTTAATGCAGTGGTTGCCTAATCTGATTCTCAGGACCCCATGTCCTGTACATTTTGTACGTCTCTTTTATTTGACACACAAGGATCAGTTCAAGTATCGAGGCTAACAAGCTGATaactgaatcaggtgtgttaagtgcatcatccgagtatttaaagtgcactttacTTTTTTACTACActtttttgaaaaactttttttagtacaaaatggcgtagaaaaGTGAATAAGTTTGTGATTTGGGGTGCGCCTAAACAAAATGTGCAGGGCAGAGGGGCCTGAGGACCAGCactgagaaccactgctataacGGAAGTTGGGAAGCGCAAAATGTCACCAAATCTTCAAACGTGATGACAAACAAGAGATGTTTAACTATAAAGAATCCATTATTTCATTTTAACATGAATGAACATAGCTAAAAAGGTTAGCAAAACCAAGCTCATCACTATTCTAGCACTAGTGCATAAATTTCTGTACATGATCCACTGATGAATGACTTCGGAAGCTAGGGTGCTGATTGAGACACCCCTAAGTACTTTTCAGGAGGTTCAAACAGCTTACTTGAAAAGTGCACTTCTGTGCTGGTGacaaaatgttgcaaaaacattttttaaatggaaaCAGTGCTGCGTTGAACATTGCACAAGTGTTGCAACTATGGCAGTTGAGCAATCTATTTTTTGACCATTTTAGGAAACTTCCGTTTTTGTCttctttatacatttttgcataaCATAGTagcaaaatatctaaatattgctatatgtttttgttacattattcAGTGTCGAGCACACCTTCCGGTAGAAGGATATGGActataaagcattaaaaatacaGCATGATATTCGTACAGACTTTATTCTAAATAACTTCTAGATCTACATGTGCTTTTATTAATTCAGCTATTTTCCTTTCATTAGGAAACGGAAGTTAAAATTGACACTTGAAATggtcctgaaatgagaaaaaaaaagtagggtGGTGTATGATTTTGTTCTTTGGGAAATAATGGGATTGTTTCCTTCAAGAAAATGAAGGAAGACTGATGAATGGACAAATCCGCAGCAGGTGAAATAGTTTCAAGGGGTAGGAAAGGTTACGGTATTTAATTAAAGCATATGAGGGTGGCtaagtgggtagcgctgttgccttacagcaagaaggtcgctggttcgagtcccggctgggtcagttggcatttttatgtggagtttgcatgttctccatatgcttgcgtgggtttgcggtacaggtgaattgggtaagcgaaattgtccgaagtgtatgtgtgtgaatgagagtgtatgggtgtttcccagtgatgggttgcagatggaagtgTTAAActtatactggataagttggtggttcattctgctgtggcatccctggattaataaagggactaagccgacaagaaaatgaatgaatgaatgcttatgAGGGCAAATTAATTGTTACAAATTAATGAAGTGCACAGAAACATAGTTTATAACAGTAACAACTATGTACATATAAAAAGAAGAAGAGAACATTTTGGaattttagatttaatgtaagcaAATGTGCAAAAAGAGAGCCCATGTAACAATCGCAGAGAGGCTATAAGTCACGCTAGTAGAATGATCTTCCCATTCCCGCTCGGATTGCTGATACACTGGTATTCTTCAAATGACAACTCAAAACCCATCTCTTCGGAGAAAACCTGAACCCCTGGTGAATTATACCAAAAGCATCCATTGAAGCAtttctcttttttctctctctaaaaaaaaaaaagcacttctactccagcactaaattctctgagcacaaacaagttacttTGAATAAATAGCACTTcctgtgtattgcctcttcttgttgaatcactgaatgcctcttCTTTAAAACTGCgtgc

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0002184 cytoplasmic translational termination biological_process
GO:0018444 translation release factor complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003747 translation release factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040822-36 Predicted to enable GTPase activity and translation release factor activity. Predicted to be involved in cytoplasmic translational termination. Predicted to be part of translation release factor complex. Is expressed in axial mesoderm; immature eye; myotome; optic primordium; and retina. Orthologous to several human genes including GSPT1 (G1 to S phase transition 1).

Ensembl:

ensembl_id ENSDART00000180148

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010732 lncRNA upstream 91391 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009224 lncRNA upstream 221896 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010915 lncRNA upstream 494572 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009195 lncRNA upstream 817926 18543792 ~ 18544621 (+) False XLOC_004641
TCONS_00010914 lncRNA upstream 1134543 18209871 ~ 18228004 (+) True XLOC_004635
TCONS_00009244 lncRNA downstream 3043 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010733 lncRNA downstream 76414 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00010916 lncRNA downstream 881190 20263585 ~ 20265465 (+) True XLOC_004675
TCONS_00009263 lncRNA downstream 961494 20343889 ~ 20346635 (+) False XLOC_004677
TCONS_00010917 lncRNA downstream 961504 20343899 ~ 20346635 (+) False XLOC_004677
TCONS_00009239 mRNA upstream 361 19356623 ~ 19362186 (+) True XLOC_004664
TCONS_00009238 mRNA upstream 8776 19348538 ~ 19353771 (+) True XLOC_004663
TCONS_00009236 mRNA upstream 22327 19320657 ~ 19340220 (+) False XLOC_004662
TCONS_00009237 mRNA upstream 22327 19320673 ~ 19340220 (+) True XLOC_004662
TCONS_00009235 mRNA upstream 44173 19305456 ~ 19318374 (+) False XLOC_004662
TCONS_00009242 mRNA downstream 2220 19384615 ~ 19393968 (+) False XLOC_004666
TCONS_00009246 mRNA downstream 19459 19401854 ~ 19402950 (+) True XLOC_004668
TCONS_00009247 mRNA downstream 25978 19408373 ~ 19659256 (+) True XLOC_004669
TCONS_00009248 mRNA downstream 484470 19866865 ~ 19932623 (+) False XLOC_004671
TCONS_00009251 mRNA downstream 576450 19958845 ~ 19975373 (+) False XLOC_004672
TCONS_00009203 other upstream 662925 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009200 other upstream 763583 18598850 ~ 18598964 (+) True XLOC_004644
TCONS_00009179 other upstream 1236773 18125658 ~ 18125774 (+) True XLOC_004634
TCONS_00009175 other upstream 1421504 17927871 ~ 17941043 (+) False XLOC_004633
TCONS_00009172 other upstream 1634896 17727542 ~ 17727651 (+) True XLOC_004630
TCONS_00009243 other downstream 3031 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009245 other downstream 5748 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009249 other downstream 484603 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other downstream 495447 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009270 other downstream 1116588 20498983 ~ 20499080 (+) True XLOC_004679

Expression Profile

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