RNA id: CI01000069_04595809_04598174.mRNA


Basic Information

Item Value
RNA id CI01000069_04595809_04598174.mRNA
length 2045
RNA type mRNA
GC content 0.47
exon number 4
gene id CI01000069_04595809_04598174
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4595750 ~ 4598174 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGAGAAATCTGATATAATAAATTTCAGCTGTCTTGAAAAAGAGCTACAAGCGGCGCTGGAAGCGGATAGGAAATATCAGAGGGAAAATGATGCCAAATTTCGTGCTTTGAACCAAAATGTCGCCAGCTATGAAGAATTCAGAGACATAGTACTTGCATCTCACTTAAAGCCTCTTGATAAAAAGGACATCTCTGGTGCAGCAAGAAAGCAGCCGTGGAATCCAATTGCTTTTGGGACAAAGCATGAAAGTGCTTCAACTGAAGAGGTCCAGCCTTGGGTATCTGAGATTCAGCCAAGAAGTGCATCAGAATTCATCCGTGACTGGCGCAGGTTTGCAGGGAACTCGTTTGAAAAGTACAGTCTCCTTGTGAGTCTGGGAGGCAAGGCTCTGCAGGAAATCTTCAGCACTGAGGTTGGCTTCGGTCTTCTAGGCGAGTTCTTTCTGATTCTGTCACAGTGTCTTAAGTCAGGGGATGAGGAAAAAGTGATTGGAGTGCTGGACGGCCTTTCCAGAACTGGCCGCTTTGGCCTCAACCAGTCTCTTCTTAGTCAGGCAGAACAAAAAGCCTGTGAGGAGCTTTTCCACAAGCTACAAGTTGCAGGAGGAGAATATCATACTTCTAAAGATGATTCTTCTGACACTTCAATGGTTTGTGAGGCCAGTCTGACCCATGTGGAGGAAGATGAGACCGACATTACAATAAAACTTGAAAGCAGAAATATGTTAAAAGAAGTGCTGGTCATTTGTTTTTCAGCCATCTTCCCATTGTTACTTTCAGCCTATGAGGCTCCTGAGGATAAGGAGGACATTTTTGCCAGCAGGCCCTGTCCTGCATTTCTTGTCTTTGACACCGCTGCCTTCATAGCCGACATGACCATTGAACTTCCTTGTCACTGCAAACCAGAGGAGACTTATTCAGTGGTATGGTACTATCAAAAACAAATTGGCTCCATGAACACCAAGGTCCTCACGGACTTTGAAGGCACAACGGTGGTGGAATCATCCAAAGTTGGCAGAGGGTCAGATCTGTACAATCGCTTTTCCATCCGTTTGTTCAGCCTTCTCATCTTCAGGGTCCAGAAAGCTGACTCAGGGCACTATATCTGTGGCACGGCCTCTGGTGAATTCTTCTACGGCTACGACGTTGATGTCCAGGAGGTCCGTCAAGTTTTATTTCCCTGGAACGTCAAACAGAGAACTCAAGTACAAGAAGCAGAGCCCGTCAGAATGAAAACGGAAATGTTTCAAGTGTTCACCAGCTACTGGTCATGGTCTAAATGTGACCGCTGTGACATCCAGGGGGAGCAGACGCGTGTGGGACTTTGTTATGTCAAAAGCATTTACCTCCATGTACGTTATCAGCATGAATCGGGTGCAGCGGCTTCCTGTGGTTCCTCAGCCGTTCCCCAACAGTTTGGACTTTCAGGCAGTGGCTACGGTGCCGAGCTTGAGGTGAGGAACTGCCACACCAGCTGTACTCCGAAACCTACAACATCTCCAGAGAGACAAGCTCTGCTGAAGTTCCTCGAGTATGATGATCGAGGTGTCACCATCCACTTCCACAACCACCCCACAGACTCTGATCTGGTCTTGACCTGTCCTGGCGCCAAACCACAGTACACTGTGGCCTGGGATAAAGGCTCAGCACCTCTTTATCGCTCACAGTATATGGAGGGTTTGAATAAGACGTCTCGCATCTTCATTGACACCGGTCACCACCTGCACTTCAGGCCTGTGCGTCTGGAAGATAAAGGCTCCTATTTCTGCTGGCTCCAAGGCGAGCTGGCTGCAGAGATCAGACTGGGGGTGTATCTGCGCTTGGGACGTTTGCGTCAAATCTCTGACCCGGAGTCTCTCTATGCACTACAAGTTATACTTGCTTGCTACATTGGCATTACAGCTATGTTTCTCTTGACTGTCTTAGTCAGATTTATTTGGCAGATAAGCAAGGAAGATACATTTGCAGATATTAACAGAACTTGAATGTGCATCAATTATACTGACGTATGTTTACTGTGAAGTGCAACGTGAAATTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313159 lncRNA downstream 38086 4555209 ~ 4557664 (-) True G276052
TU313149 lncRNA downstream 67870 4527082 ~ 4527880 (-) True G276042
TU312866 lncRNA downstream 380060 4143168 ~ 4215690 (-) True G275770
TU313177 lncRNA upstream 15680 4613854 ~ 4617428 (-) False G276064
TU313179 lncRNA upstream 15680 4613854 ~ 4621254 (-) False G276064
TU313181 lncRNA upstream 18755 4616929 ~ 4623737 (-) False G276064
TU313180 lncRNA upstream 24928 4623102 ~ 4624902 (-) True G276064
TU313251 lncRNA upstream 66996 4665170 ~ 4665413 (-) True G276129
CI01000069_04579172_04593867.mRNA mRNA downstream 1727 4578609 ~ 4594023 (-) True CI01000069_04579172_04593867
CI01000069_04574882_04576116.mRNA mRNA downstream 19622 4574366 ~ 4576128 (-) True CI01000069_04574882_04576116
CI01000069_04444787_04454292.mRNA mRNA downstream 141458 4444226 ~ 4454292 (-) True CI01000069_04444787_04454292
CI01000069_04387255_04404199.mRNA mRNA downstream 191407 4386997 ~ 4404343 (-) True CI01000069_04387255_04404199
CI01000069_04380270_04382951.mRNA mRNA downstream 212799 4380172 ~ 4382951 (-) True CI01000069_04380270_04382951
CI01000069_04599199_04600481.mRNA mRNA upstream 995 4599169 ~ 4600481 (-) True CI01000069_04599199_04600481
CI01000069_04603992_04607459.mRNA mRNA upstream 4925 4603099 ~ 4607586 (-) True CI01000069_04603992_04607459
CI01000069_04628032_04638137.mRNA mRNA upstream 29679 4627853 ~ 4638137 (-) True CI01000069_04628032_04638137
CI01000069_04692723_04695795.mRNA mRNA upstream 94318 4692492 ~ 4696567 (-) True CI01000069_04692723_04695795
CI01000069_04802439_04905601.mRNA mRNA upstream 203423 4801597 ~ 4905886 (-) True CI01000069_04802439_04905601
TU312842 other downstream 788673 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 826530 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1019415 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 1169376 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 1517582 2992504 ~ 3078168 (-) True G275699
TU313201 other upstream 341347 4942073 ~ 4942199 (-) True G276079
TU313215 other upstream 371121 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051653 True 2174 lncRNA 0.46 4 NC_007114.7 33420219 ~ 33422734 (-)