RNA id: TU313180


Basic Information

Item Value
RNA id TU313180
length 1729
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G276064
representative True

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 4613854 ~ 4624902 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAACATCAGTTTATTTGGATATTGGTTGTGGAAAGTTTCACATGTAAACGCAGAGAATGGTCCAGGTGTCATATTGGGGGGGGGGGAGGAGGAACTGGTTAATTCATAAAAAACATTTTTTTTCTTATCCAAGAACAAATGGCACTGTTTTGCAATGTTTCCCCATGGTGAACTATTACACAACATTTTGAAACTTAAGATCAACATTCTGTTTTTCACCCCCTTTCACTGGGTAATCTGAAAATATCTTATTTGACAATTTTAATATGCTCCAAGAACCTGAGCAAAGTCTGTCAGGCCTGATAACACAAGGTTGACCAAGGATTTGGGAAACTGTTAATAGACTGAAATATGAGGTAAAAATTAGCAATGAGTGTTATTAGATTTTGAAGTACATTTAATTGCCAATTCGCATTTCACACTAAACTAGCTGCCAAAAAACTTTGCAAGTCACAGTGTCTTAAAGGGTTAGTTCACCCAAAAATGAAAATTATGTCATTTATTACTCACCCTCATGTCGTTCTACACCCGTAAGACCTTCTTTCATCTTCAGAATACAAATTAAGATATTTTTGATGAAATCTGATGGCTCAGTGAGGCCTCTATTGAGAGCAAAGCCACTGAACCTCTCAAGATCCAGAAAGCTACTAAAAACATATTTAAATCAGTTCATGAGACTACAGTGGTTCAACCTTAATATTATAAAGCGATGAGAATATTTTTTGTGCGCCAAAAAAAACAAAATAACTTTTTAACAATATCTAATGATGGCCGATTTCAAAACACTGCTTCATGATGCTTTGGAGCTTTATGAATCGAATCAGTGGTTCGGAGCGACAAAGTCACTTGATTTCAGCAGTTTGGTGCTCCGAACCACTGATACTTTATAATATTAAGGTAGAACCACTGAACTCACATGAACTGATTTAAATGTTTTAAGTACCTTTATGGATCTTGAGAGAGGAAGTACCGTGCCTGTCAATGGAGGCCTCACTGAGCCAACGGATTTAATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGTCTTATGGGTGTAGAACGACATGAGAGTGAGTAATTAAAAGACATTATTTTCATTTTTGGGTGAACTAACGCTTTAAAGCCGCCAGTGAATTCAGCTCATAACATGTTCCAAAAGCATCTCTTATCGTCGTGGTCCACAATAACAATAATGCTAATTCAAACTAAATGCGGTTGTGTGACAAGGCTTGTTAATAGTCCCTTTAAAACAGTTTGCTACATAATGAAGAGTTTCCAATGGGATTATCTTAAAAATGTGATAGGAATGACAGTCACTGAGCAAGTACATGATGTCATGTTCAGCAAGAAGAAACAGACTTAAAGTTTATCCTTCTCAAGTTGACATTTACAGCCAAAACAGAACCACCATGCAGTATGTCTGTCCTATAGTCTCAATATCTACGGTATATACAGTCTACAAACACACGCACATCTTATAATAAGTTAAAATTCACAAAACAATGTGCATGTTGGTTCTGTGAACTCCTTAAGCTTTGTCATCAAAGTGGTATGGTCCATGTGGGCAGGTAAAAGGCATGAGTAAAACACGGAGGGTGTACTGGACTCTTGAAAAGGGGCGAGTTTAGCAGCCCCCGACCGCACCAGCAAGGGTCACTGTGGAGTTGTTCTGAGGTTTGCCTTTGTGCCGCTGACCTCCTCGTCTTCTGCCTCCAGACTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313179 lncRNA downstream 1848 4613854 ~ 4621254 (-) False G276064
TU313177 lncRNA downstream 5674 4613854 ~ 4617428 (-) False G276064
TU313159 lncRNA downstream 65438 4555209 ~ 4557664 (-) True G276052
TU313149 lncRNA downstream 95222 4527082 ~ 4527880 (-) True G276042
TU312866 lncRNA downstream 407412 4143168 ~ 4215690 (-) True G275770
TU313251 lncRNA upstream 40268 4665170 ~ 4665413 (-) True G276129
TU313255 lncRNA upstream 44430 4669332 ~ 4669811 (-) True G276133
TU313216 lncRNA upstream 74369 4699271 ~ 4703469 (-) True G276094
TU313236 lncRNA upstream 79150 4704052 ~ 4710962 (-) True G276114
TU313192 lncRNA upstream 166480 4791382 ~ 4792803 (-) False G276071
CI01000069_04603992_04607459.mRNA mRNA downstream 15516 4603099 ~ 4607586 (-) True CI01000069_04603992_04607459
CI01000069_04599199_04600481.mRNA mRNA downstream 22621 4599169 ~ 4600481 (-) True CI01000069_04599199_04600481
CI01000069_04595809_04598174.mRNA mRNA downstream 24928 4595750 ~ 4598174 (-) True CI01000069_04595809_04598174
CI01000069_04579172_04593867.mRNA mRNA downstream 29079 4578609 ~ 4594023 (-) True CI01000069_04579172_04593867
CI01000069_04574882_04576116.mRNA mRNA downstream 46974 4574366 ~ 4576128 (-) True CI01000069_04574882_04576116
CI01000069_04628032_04638137.mRNA mRNA upstream 2951 4627853 ~ 4638137 (-) True CI01000069_04628032_04638137
CI01000069_04692723_04695795.mRNA mRNA upstream 67590 4692492 ~ 4696567 (-) True CI01000069_04692723_04695795
CI01000069_04802439_04905601.mRNA mRNA upstream 176695 4801597 ~ 4905886 (-) True CI01000069_04802439_04905601
CI01000069_04919538_04930550.mRNA mRNA upstream 294117 4919019 ~ 4930550 (-) True CI01000069_04919538_04930550
CI01000069_04932463_04940554.mRNA mRNA upstream 307242 4932144 ~ 4941148 (-) False CI01000069_04932463_04940554
TU312842 other downstream 816025 3805663 ~ 3805758 (-) True G275746
TU312875 other downstream 853882 3765673 ~ 3769220 (-) True CI01000069_03768812_03787588
TU312899 other downstream 1046767 3563293 ~ 3576335 (-) True CI01000069_03571631_03573352
TU312851 other downstream 1196728 3426149 ~ 3426374 (-) True G275755
TU312791 other downstream 1544934 2992504 ~ 3078168 (-) True G275699
TU313201 other upstream 314619 4942073 ~ 4942199 (-) True G276079
TU313215 other upstream 344393 4985966 ~ 4986424 (-) True CI01000069_04985959_04986408

Expression Profile