RNA id: CI01000070_01377286_01381119.mRNA


Basic Information

Item Value
RNA id CI01000070_01377286_01381119.mRNA
length 2123
RNA type mRNA
GC content 0.47
exon number 4
gene id CI01000070_01377286_01381119
representative True

Chromosome Information

Item Value
chromosome id CI01000070
NCBI id null
chromosome length 4890654
location 1376589 ~ 1381336 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTTCGGGATTGCAGTTAAAAGTACAATAACCTTTGCATAACAAAAGCATTTTTTTTCACCCGCTGCCTGAGGCTCGGCGCATGCGCGCTCGCTGTTTGCTGTCACTAAAACATTTTTCTTCGCATTGGAAACTGTCACGAGTGACGTCAATCACGGAGCTCTGACCAATTAGAGCGCTCGGTGATTGTTTGGCTCCACGGGCTGCAGCGCCTACCATGAATCTCTATTCAGTATATCAAAGCGTCCTGCTGCTGCCTCTCAACCGAATGGGATTCCACGCGGCAACGGTCCCGTACTCTATGTCTCACACGGCCCAGGCGCTATCCGCAGGTAGGGATTTCCTCATTCGCCGAGATTTGACAGCTCAAGCCATGCCCGTGCTGACCGACCAGACTTCTGGTTCAGCCTCTCACCACGGAATGTTTGTCTCAACAACAGGTAGCTATCCGGGACACTATGGTCATCACCCCGACCCTGGGAACCATTCTCTCTTCCCTGGACTTCATCACGAGCAGCCATCTACCGGAGCACCAGGTGGCCAAGCCTTGAACGGACAAATAAGGTTAGGAATACCTGCCGAAATGTACGTTCGGTCTGATCATTTGAGTCAAGTAGCGAGCTCCAGGGCAGACCCGTTTGCTGCTTCTCCGCTGCACGGATACGGCGGGCTCAATCTGAACATGAATCTCAGCGCACACCACCACCACCACCACGGAGCTGGCGCTTTTTTCCGTTACATGAGGCAACCGATCAAGCAAGAGCTCATCTGCAAGTGGCTGGAGCCAGAGCACTCCGCCAAGAAACTTTGCTCCAAAACTTACAGCACCATGCACGAACTAGTGACACATGTGACCGTGGAGCACGTTGGAGGACCGGAGCAAGCGAACCATATCTGTTTTTGGGAGGAATGTCCACGAGAGGGGAAGCCGTTTAAAGCGAATACACTAATATTCTTGATTGGCTTTCTCGGCCCAACAGCTGAAGGTGAAAAGCCTTTCAAATGCGAGTTTGACGGCTGTGACAGACGGTTCGCCAACAGCAGTGACCGGAAAAAGCATTCCCACGTACACACTAGCGATAAGCCGTACAACTGCAAAGTCAGAGGTTGTGACAAATCGTACACGCATCCCAGCTCTTTGAGAAAACACATGAAGGTGCACTGCAAGTCTCCACCTCCGAGTTCGGGTTACGAATCATCGACTCCATCTCTTGTTTCTCCTTCATCGGACTTGGGACGGGAGCCAGCTCCCTCTGCGATCTCCGAGCCACTCTCATCATCGTCCCAGCCGGCCAATTTAAGCGAATGGTACGTGTGTCACAGCTCCGGTGCCAGTGGCACTCAGACCCCACCCAGCGGTTCCTCCACACCCGGCCATACGGAGGGGCCAACGTACGGCAATCCTGAACGGAGGGACGCCTTCTAACAAAATGTAATATTAATTTGGCGAAGTGACTGAAATGACATCTTTTCTTATTTGGACAGTCCATTTTGGACTGACGCCTGTGTGAGGCTTGTCCACTGTTACTGCCTTACTGAAGGATGCACTGGCCCTTTGACAGCTAATGTCACTGCCTAACCACCAATCGATATAAAACATGTCCCGAGTGTCTATGTTTCTCAATAGTGTAGGCATGTCACTGTATCATTTTGTAAATAGACCGCTTTGATTTCAATATCTTAATTTATTTTTGAATCGGTAAAGAATTTCTTTTTGTATTATTGAACCAAAGTGCTTAATTATTAAACCTGTACAGTTGTAAATGACGACGTTTTAATGTCCATGTGTGAACGGTAATTTTGTAAGGTTTTTGTCTTTCAGCAATTTTTAAATGTTTGCTACTCTACTTTGTACAAAAAGTAATATTTCGGATTATTTGAATTTCATAAAGACGTAGACTCTTTCCTCTTTTTGTGCTTTCTCCAGCCAAGCCAATTTGATGGAAACAGTGTAATTGTATTTGATATGACGTTTCATTTATGATTAGTCATTTATCAATGTGGTTATTTTGTGATTTTGTAAAACTTGTCAGCAATCCATTTTTATGAAAAATACGAATTATCAGAAGAGACCTTAAAATGTGTACCGAAATGCCTTGTAAGTTGTCAGTATTTTGAATAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K09225 ZIC4; zinc finger protein ZIC 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314385 lncRNA downstream 250112 1125989 ~ 1126477 (-) True G277148
TU314362 lncRNA downstream 281161 1074724 ~ 1095428 (-) True G277125
TU314315 lncRNA downstream 421111 934437 ~ 955478 (-) True G277083
TU314269 lncRNA downstream 486074 877539 ~ 890515 (-) True G277042
TU314252 lncRNA downstream 538119 802032 ~ 838470 (-) True G277027
TU314452 lncRNA upstream 21579 1402915 ~ 1403476 (-) True G277203
TU314456 lncRNA upstream 26339 1407675 ~ 1407977 (-) True G277207
TU314457 lncRNA upstream 26922 1408258 ~ 1408733 (-) True G277208
TU314687 lncRNA upstream 34397 1415733 ~ 1415982 (-) True G277427
TU314715 lncRNA upstream 68143 1449479 ~ 1449745 (-) True G277452
CI01000070_01259396_01261284.mRNA mRNA downstream 114456 1259245 ~ 1262133 (-) True CI01000070_01259396_01261284
CI01000070_01221859_01224836.mRNA mRNA downstream 151665 1221568 ~ 1224924 (-) True CI01000070_01221859_01224836
CI01000070_01158751_01188563.mRNA mRNA downstream 188026 1158368 ~ 1188563 (-) True CI01000070_01158751_01188563
CI01000070_00813271_00821452.mRNA mRNA downstream 555137 813128 ~ 821452 (-) False CI01000070_00813271_00821452
CI01000070_00776454_00777822.mRNA mRNA downstream 596525 776370 ~ 780064 (-) True CI01000070_00776454_00777822
CI01000070_01691128_01706525.mRNA mRNA upstream 308906 1690242 ~ 1706599 (-) True CI01000070_01691128_01706525
CI01000070_01744837_01807006.mRNA mRNA upstream 362875 1744211 ~ 1807096 (-) True CI01000070_01744837_01807006
CI01000070_01829159_01832277.mRNA mRNA upstream 446501 1827837 ~ 1832277 (-) True CI01000070_01829159_01832277
CI01000070_02016971_02021321.mRNA mRNA upstream 634775 2016111 ~ 2023374 (-) True CI01000070_02016971_02021321
CI01000070_02197425_02225261.mRNA mRNA upstream 815667 2197003 ~ 2225261 (-) True CI01000070_02197425_02225261
TU314181 other downstream 552039 824258 ~ 824550 (-) True G276979
TU316533 other upstream 1905631 3286967 ~ 3293215 (-) True G279144
TU316515 other upstream 2004607 3385943 ~ 3457869 (-) True G279126
TU317455 other upstream 3275212 4679307 ~ 4683322 (-) True G280009
TU317464 other upstream 3448381 4867133 ~ 4867267 (-) True CI01000070_04844701_04867804

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045245 False 2555 mRNA 0.46 2 NC_007135.7 4977862 ~ 4982417 (+)
bowfin (Amia calva) AMCG00009057 True 2414 mRNA 0.45 4 CM030126.1 23645454 ~ 23656150 (-)
mexican tetra (Astyanax mexicanus) TU118167 True 2217 lncRNA 0.53 1 NC_035906.1 954222 ~ 956438 (+)