CI01000070_01377286_01381119 (ZIC4)


Basic Information

Item Value
gene id CI01000070_01377286_01381119
gene name ZIC4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000070
NCBI id null
chromosome length 4890654
location 1376589 ~ 1381336 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000070_01377286_01381119.mRNA
AACTTCGGGATTGCAGTTAAAAGTACAATAACCTTTGCATAACAAAAGCATTTTTTTTCACCCGCTGCCTGAGGCTCGGCGCATGCGCGCTCGCTGTTTGCTGTCACTAAAACATTTTTCTTCGCATTGGAAACTGTCACGAGTGACGTCAATCACGGAGCTCTGACCAATTAGAGCGCTCGGTGATTGTTTGGCTCCACGGGCTGCAGCGCCTACCATGAATCTCTATTCAGTATATCAAAGCGTCCTGCTGCTGCCTCTCAACCGAATGGGATTCCACGCGGCAACGGTCCCGTACTCTATGTCTCACACGGCCCAGGCGCTATCCGCAGGTAGGGATTTCCTCATTCGCCGAGATTTGACAGCTCAAGCCATGCCCGTGCTGACCGACCAGACTTCTGGTTCAGCCTCTCACCACGGAATGTTTGTCTCAACAACAGGTAGCTATCCGGGACACTATGGTCATCACCCCGACCCTGGGAACCATTCTCTCTTCCCTGGACTTCATCACGAGCAGCCATCTACCGGAGCACCAGGTGGCCAAGCCTTGAACGGACAAATAAGGTTAGGAATACCTGCCGAAATGTACGTTCGGTCTGATCATTTGAGTCAAGTAGCGAGCTCCAGGGCAGACCCGTTTGCTGCTTCTCCGCTGCACGGATACGGCGGGCTCAATCTGAACATGAATCTCAGCGCACACCACCACCACCACCACGGAGCTGGCGCTTTTTTCCGTTACATGAGGCAACCGATCAAGCAAGAGCTCATCTGCAAGTGGCTGGAGCCAGAGCACTCCGCCAAGAAACTTTGCTCCAAAACTTACAGCACCATGCACGAACTAGTGACACATGTGACCGTGGAGCACGTTGGAGGACCGGAGCAAGCGAACCATATCTGTTTTTGGGAGGAATGTCCACGAGAGGGGAAGCCGTTTAAAGCGAATACACTAATATTCTTGATTGGCTTTCTCGGCCCAACAGCTGAAGGTGAAAAGCCTTTCAAATGCGAGTTTGACGGCTGTGACAGACGGTTCGCCAACAGCAGTGACCGGAAAAAGCATTCCCACGTACACACTAGCGATAAGCCGTACAACTGCAAAGTCAGAGGTTGTGACAAATCGTACACGCATCCCAGCTCTTTGAGAAAACACATGAAGGTGCACTGCAAGTCTCCACCTCCGAGTTCGGGTTACGAATCATCGACTCCATCTCTTGTTTCTCCTTCATCGGACTTGGGACGGGAGCCAGCTCCCTCTGCGATCTCCGAGCCACTCTCATCATCGTCCCAGCCGGCCAATTTAAGCGAATGGTACGTGTGTCACAGCTCCGGTGCCAGTGGCACTCAGACCCCACCCAGCGGTTCCTCCACACCCGGCCATACGGAGGGGCCAACGTACGGCAATCCTGAACGGAGGGACGCCTTCTAACAAAATGTAATATTAATTTGGCGAAGTGACTGAAATGACATCTTTTCTTATTTGGACAGTCCATTTTGGACTGACGCCTGTGTGAGGCTTGTCCACTGTTACTGCCTTACTGAAGGATGCACTGGCCCTTTGACAGCTAATGTCACTGCCTAACCACCAATCGATATAAAACATGTCCCGAGTGTCTATGTTTCTCAATAGTGTAGGCATGTCACTGTATCATTTTGTAAATAGACCGCTTTGATTTCAATATCTTAATTTATTTTTGAATCGGTAAAGAATTTCTTTTTGTATTATTGAACCAAAGTGCTTAATTATTAAACCTGTACAGTTGTAAATGACGACGTTTTAATGTCCATGTGTGAACGGTAATTTTGTAAGGTTTTTGTCTTTCAGCAATTTTTAAATGTTTGCTACTCTACTTTGTACAAAAAGTAATATTTCGGATTATTTGAATTTCATAAAGACGTAGACTCTTTCCTCTTTTTGTGCTTTCTCCAGCCAAGCCAATTTGATGGAAACAGTGTAATTGTATTTGATATGACGTTTCATTTATGATTAGTCATTTATCAATGTGGTTATTTTGTGATTTTGTAAAACTTGTCAGCAATCCATTTTTATGAAAAATACGAATTATCAGAAGAGACCTTAAAATGTGTACCGAAATGCCTTGTAAGTTGTCAGTATTTTGAATAAA

Function

symbol description
zic4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell proliferation in hindbrain and fourth ventricle development. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; central nervous system; hindbrain neural rod; lateral plate mesoderm; and neural plate. Orthologous to human ZIC4 (Zic family member 4).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K09225 ZIC4; zinc finger protein ZIC 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000070_01377286_01381119.mRNA True 2123 mRNA 0.47 4 1376589 1381336

Neighbor

gene id symbol gene type direction distance location
CI01000070_01259396_01261284 NA coding downstream 114456 1259245 ~ 1262133 (-)
CI01000070_01221859_01224836 NA coding downstream 151665 1221568 ~ 1224924 (-)
CI01000070_01158751_01188563 PLOD2 coding downstream 188026 1158368 ~ 1188563 (-)
CI01000070_00813271_00821452 NA coding downstream 555137 813128 ~ 821452 (-)
CI01000070_00776454_00777822 NA coding downstream 596525 776370 ~ 780064 (-)
CI01000070_01691128_01706525 NA coding upstream 308906 1690242 ~ 1706599 (-)
CI01000070_01744837_01807006 NA coding upstream 362875 1744211 ~ 1807096 (-)
CI01000070_01829159_01832277 NA coding upstream 446501 1827837 ~ 1832277 (-)
CI01000070_02016971_02021321 KLF6, KLF6A coding upstream 634775 2016111 ~ 2023374 (-)
CI01000070_02197425_02225261 PFKPB, PFKP coding upstream 815667 2197003 ~ 2225261 (-)
G277148 NA non-coding downstream 250112 1125989 ~ 1126477 (-)
G277125 NA non-coding downstream 281161 1074724 ~ 1095428 (-)
G277083 NA non-coding downstream 421111 934437 ~ 955478 (-)
G277042 NA non-coding downstream 486074 877539 ~ 890515 (-)
G277027 NA non-coding downstream 538119 802032 ~ 838470 (-)
G277203 NA non-coding upstream 21579 1402915 ~ 1403476 (-)
G277207 NA non-coding upstream 26339 1407675 ~ 1407977 (-)
G277208 NA non-coding upstream 26922 1408258 ~ 1408733 (-)
G277427 NA non-coding upstream 34397 1415733 ~ 1415982 (-)
G277452 NA non-coding upstream 68143 1449479 ~ 1449745 (-)
G276979 NA other downstream 552039 824258 ~ 824550 (-)
G279144 NA other upstream 1905631 3286967 ~ 3293215 (-)
CI01000070_03427085_03440777 NA other upstream 2004607 3426277 ~ 3440777 (-)
CI01000070_04646935_04666885 NA other upstream 3275212 4646890 ~ 4667474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009057 zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562 coding CM030126.1 CM030126.1 23645454 ~ 23656150 (-)
mexican tetra (Astyanax mexicanus) G87773 zic4,LOC108431767,LOC100703503,LOC107588037,LOC102208739,LOC101481722 non-coding NC_035906.1 CM008309.1 954222 ~ 956438 (+)