AMCG00009057 (zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562)


Basic Information

Item Value
gene id AMCG00009057
gene name zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23645454 ~ 23656150 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009057
ATGGTCGTCTTCTTTGTTTTGCATAGTTTAAATGCACTTTTAAGGCACCCGAAACCAATCTGGAAGACATCTTCAACAGTTGTTCTAAAATTAGGAGTAATGAGCGTGGATGCTTTGGGAAGTCCAATGATGGACCCTGCGTTTTCCAAACGGAACACGGCGTTGAGATTAGTTGACTTGGCAGGGGCtcaccaccatcaccatcatcacCATACCCCTCAGAGCATGACAGGCTTCCCGGGGTTCAGCAGCCATCCTCACTCAATGGCTCACACGCACCCTGGGGAGATTACTTCAGAACCCCGCCTGGGGCCAAGTCCATTCGGGCCAGAACACATGGGGCACTCCGCGGCCCTCAAACTCAGCCCAGCCCATCATTATccccaccaccatcaccaccataATCATCATATGGCAGGCCACAGTGAAGTTGTCTCCAGTCAAACGGGAGCTTTTGGCCCAGTGCAGACTGCCGCGGTGCCATATTCTATGTCTCACACGGCCCAGGCATTGTCTGCAGGTAGCTACCCTGGACACTATGGTCATCACCCCGAAGCTGGAAACCATACCCTCTTCCCTGGACTCCATCACGAACAACCTTCTAACGGAGCTCCAGGTGGCCAAGCTCTGAATGGACAAATAAGGTTAGGAATACCTGGAGAAATGTACGTTAGGTCTGATCACTTGAGTCAAGTGGCAGGTTCTAGGGCTGATCCGTTTACTGCCTCACCTCTGCACGGCTACGGCGGTATAAATCTGAACATGAATCTCAATGCTCACCACCACGGTCCCGGTGCGTTTTTTCGTTACATGAGGCAGCCGATCAAGCAAGAACTTATCTGCAAATGGATGGACCCGGAACACGCCGCAAAAAAACTTTGCTCCAAAACTTACAGCACCATGCATGAACTGGTAACGCATGTCACAGTGGAACACGTCGGAGGACCGGAGCAGGCTAATCATATTTGTTTCTGGGAAGAGTGTCCCCGAGAAGGAAAGCCGTTTAAAGCCAAGTACAAACTGGTAAATCACATCCGAGTGCACACAGGCGAGAAACCGTTTCCATGTCCGTTCCCTGGCTGTGGTAAAGTTTTTGCAAGATCTGAAAACCTTAAGATTCACAAAAGGACGCACACAGGTGAAAAGCCGTTTAAATGCGAATTTGACGGCTGTGATCGACGCTTTGCTAACAGCAGTGACAGAAAGAAGCACTCCCACGTGCACACCAGTGATAAGCCGTACAACTGCAAAGTGAGAGGCTGTGATAAATCGTACACGCACCCCAGCTCTTTAAGGAAACACATGAAGGTGCACTGCAAGTCTCCACCTCCGAGTTCTGGCTACGAATCCTCAACTCCTTCTCTCGTCTCCCCATCTTCGGACTCGGGTCGAGACCCAGCTTCCTCCTCGCACTCCGAGCCTCTCTCATCTTCCCAAGCTGCCAATTTAAGCGAGTGGTATGTGTGTCACAGTTCTGGGGCAAGCGGCATCcctacacctcccagcaactcgTCCTCGCCTGATTCTGCGGACGGGCCTCCTTACAGGAACCCCGAACATGGGGACACGTTTTAAACAGAGACTAACATTAGAAAATATCCACAGGATGTTAAAACAATGTCCAAATGGGAAGAACGTTGGCCAAAACAGTGAACCACTCTGCTTTCATATAATAGCCTATATGATGTAATGCACTGGCACATACTAAACCACTGCTATAcagcagttgttgttgtttcttttggcAAATCTTATATGGACTAATATATGCTGGAAAATTATTGCAGCGCCTGTTATTTTTTATCGAGTTACCATACGTATTTTCGCgattttttatgtaaattatgtgTTCGCTTTCTTTATgtccataatttatttttaaagttgacatgaacacatttttgtattatcgaaccaaagtgttttaatagacaatattgtacatttgtaaatggtGATGTTTTCATGTGTAAGTGTTAATAACGATTTTGTAAAGTGATGCCTTTTCAGtcttttttgggggaaatatTTTTATCGTTTGCTACTggtttgtataaaaaataaaactcaaatgaTTTAACAGTGTcacaaaaaaagttttccatTTGTATATGCAGTTAGACCAAAATGTGTCCATATATTTAATGCCGACTAAGTATTATCGTGAGGTTTTTGACATTGCAATACTGccattacacacatacattttgaaagtcaAAAGGTATTTTCAGTAGATGTGggcattttgtgttatttagaAGATATGTGTTAAGAAACCAATAATTTGCGACAATGTCAACTCAGATTGTTAACTAGGAATCTCCGAAATGTGTTGCAGACTGCCTTTGTATTTtgtcagtatttttaaaaatcgtGTATTATAGTGATAGTATTGTAAAAACGCACAAGACGTg

Function

symbol description
zic4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell proliferation in hindbrain and fourth ventricle development. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; central nervous system; hindbrain neural rod; lateral plate mesoderm; and neural plate. Orthologous to human ZIC4 (Zic family member 4).

NR:

description
zinc finger protein ZIC 4 isoform X1

GO:

id name namespace
GO:0021534 cell proliferation in hindbrain biological_process
GO:0021592 fourth ventricle development biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09225 ZIC4; zinc finger protein ZIC 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009057 True 2414 mRNA 0.45 4 23645454 23656150

Neighbor

gene id symbol gene type direction distance location
AMCG00009055 si:ch73-206p6.1,LOC107557560,LOC107679633,LOC107739143,LOC108272643 coding downstream 176354 23450545 ~ 23469100 (-)
AMCG00009054 plod2 coding downstream 242962 23378607 ~ 23402492 (-)
AMCG00009051 NA coding downstream 827461 22721882 ~ 22817993 (-)
AMCG00009048 pcolce2,pcolce2b,LOC107588030 coding downstream 979269 22648694 ~ 22666185 (-)
AMCG00009045 atr,LOC107677746,LOC107700496 coding downstream 1038567 22559529 ~ 22606887 (-)
AMCG00009062 nck1b,nck1,LOC107734380,LOC107683484,LOC107713805,LOC107588047 coding upstream 237944 23894094 ~ 23914458 (-)
AMCG00009063 slc35g2,slc35g2b,LOC108263162,LOC107588046,LOC107687509,LOC103026733 coding upstream 304449 23960599 ~ 23961852 (-)
AMCG00009065 pccb,LOC106574468,LOC107688488,LOC107709888 coding upstream 395600 24051750 ~ 24062621 (-)
AMCG00009067 ppp2r3a coding upstream 420249 24076399 ~ 24088941 (-)
AMCG00009068 NA coding upstream 451055 24107205 ~ 24111579 (-)
G54179 NA non-coding downstream 342769 23302454 ~ 23302685 (-)
G54168 NA non-coding downstream 453959 23180327 ~ 23191495 (-)
G54167 LOC103376870 non-coding downstream 475625 23169439 ~ 23169829 (-)
G54161 NA non-coding downstream 505762 23139455 ~ 23139692 (-)
G54139 NA non-coding downstream 668772 22976461 ~ 22976682 (-)
G54273 NA non-coding upstream 160912 23817062 ~ 23819790 (-)
G54363 NA non-coding upstream 621733 24277883 ~ 24278536 (-)
G54408 NA non-coding upstream 971689 24627839 ~ 24710773 (-)
G54415 NA non-coding upstream 1008155 24664305 ~ 24666234 (-)
G54447 NA non-coding upstream 1132245 24788395 ~ 24791263 (-)
G54003 LOC107575789 other downstream 1461889 22183088 ~ 22183565 (-)
G53809 NA other downstream 3373640 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 3583275 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 3675178 19961027 ~ 19970276 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 5776758 17868386 ~ 17868696 (-)
AMCG00009060 hltf other upstream 169079 23825229 ~ 23863035 (-)
G54544 NA other upstream 1497116 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 1517527 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 1804456 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 1873679 25529829 ~ 25531566 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022749 zic4 coding NC_007135.7 CM002908.2 4977862 ~ 4983423 (+)
grasscarp (Ctenopharyngodon idella) CI01000070_01377286_01381119 ZIC4 coding CI01000070 null 1376589 ~ 1381336 (-)