AMCG00009063 (slc35g2,slc35g2b,LOC108263162,LOC107588046,LOC107687509,LOC103026733)


Basic Information

Item Value
gene id AMCG00009063
gene name slc35g2,slc35g2b,LOC108263162,LOC107588046,LOC107687509,LOC103026733
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23960599 ~ 23961852 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009063
atggatacaTCTCCTTCGAAGCAGCAGTACGGTCCAAAGAAGCGTGTTAAAATCCATCCCAATACTGTCACAGTCAAGTACACCACTCATTACCCCCAGCCGGGAGATGAAGGCTATGACGACGCTCCTTCTTTCGAAGACTTTGGACAGTTTGTTGATGATAACCCCAATAAGAAACTGTTGACTGACAGCAAGAAATATGGGCAAACGTTCTTCGGTACCATGGACGCTCGCAGTAGGCCTTCAACCGGGGCAAAGGACAACGGAGTGGGTGAGCAGCTCCAGAGCTTTGCAGATTCGTCCGTATTCACCTCCAGGGTGACCTGGGCAGCACTTTTTGGTGCAGCTTTGGCCCACGGGTGTGTGGCACTGATCACCAGACTGGCAGCTGATCGCTCCAAAGTGCCCTCCTTGGAACTCCTCTTCATCCGCTCCGTCATCCAGGTGCTgtctgtggtggtggtgtacTACTACCAGGAGCCCCCATTCGGGCCTAAGGGATACAGGTTGCGTCTATTCTTCTACGGAGTGTGCAACGTCATCTCCATCACCTGCGCTTACACCTCATTCGCCATCGTGCCCCCCAGTAATGGGACCATCATGTGGAGAGCCACCACCACGGTTTTCAGTGCCATCCTGGCATTCCTCCTCATCGATGAGCGGCTGGCCTACACAGACATTGTGACCGTAGTGACCAGCGTCTTCGGCCTGTGTTTGGTCATGATCCCCAACATCGTGGGTGAGGACAAGACTCTGCTGGGCTTCTGGAAGGAGGCCTTTGGTTACACCATGACGGTGATGGCTGGCTTAACTGCTGCCCTCTCCATGATCGTTTACCGAGCCATCAAGGAGAAGGTCAGCATGTGGACTGCACTCTTCACCTTTGGCTGGACAGGCACCATCTGGGGAGCTTCCACTATGTTCGTCCTGCAAGAGCCCATCATTCCCCTGGATGGGGAAACCTGGGGCTATCTCATTGGCATCTGCATTTGCTCAACAGTGGCATTCTTAGGTGTATACTATGCTTTAAACAAGTTCCACCCAGCTCTGGTCAGCACGGTCCAGCATTTAGAAATTGTTGTTGCCATGATCCTCCAGCTTCTAGTGTTACGTATGATGCCATCTGTCTATGATGTAATTGGTGGCTTGATCATTattgtcagtgtttttgttcttaCGGCAGTTAAGCTTTActgggtggggagggggagaaggCAAGACTATCAAGAGATTCTAGACTCACCCATTAAATGA

Function

symbol description
slc35g2b Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cranial ganglion; diencephalon; telencephalon; and trigeminal placode. Orthologous to several human genes including SLC35G2 (solute carrier family 35 member G2).
slc35g2 Located in Golgi apparatus and plasma membrane.

NR:

description
PREDICTED: solute carrier family 35 member G2-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009063 True 1254 mRNA 0.52 1 23960599 23961852

Neighbor

gene id symbol gene type direction distance location
AMCG00009062 nck1b,nck1,LOC107734380,LOC107683484,LOC107713805,LOC107588047 coding downstream 46141 23894094 ~ 23914458 (-)
AMCG00009057 zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562 coding downstream 304449 23645454 ~ 23656150 (-)
AMCG00009055 si:ch73-206p6.1,LOC107557560,LOC107679633,LOC107739143,LOC108272643 coding downstream 491499 23450545 ~ 23469100 (-)
AMCG00009054 plod2 coding downstream 558107 23378607 ~ 23402492 (-)
AMCG00009051 NA coding downstream 1142606 22721882 ~ 22817993 (-)
AMCG00009065 pccb,LOC106574468,LOC107688488,LOC107709888 coding upstream 89898 24051750 ~ 24062621 (-)
AMCG00009067 ppp2r3a coding upstream 114547 24076399 ~ 24088941 (-)
AMCG00009068 NA coding upstream 145353 24107205 ~ 24111579 (-)
AMCG00009071 NA coding upstream 273693 24235545 ~ 24242433 (-)
AMCG00009074 NA coding upstream 303645 24265497 ~ 24293628 (-)
G54273 NA non-coding downstream 140809 23817062 ~ 23819790 (-)
G54179 NA non-coding downstream 657914 23302454 ~ 23302685 (-)
G54168 NA non-coding downstream 769104 23180327 ~ 23191495 (-)
G54167 LOC103376870 non-coding downstream 790770 23169439 ~ 23169829 (-)
G54161 NA non-coding downstream 820907 23139455 ~ 23139692 (-)
G54363 NA non-coding upstream 316031 24277883 ~ 24278536 (-)
G54408 NA non-coding upstream 665987 24627839 ~ 24710773 (-)
G54415 NA non-coding upstream 702453 24664305 ~ 24666234 (-)
G54447 NA non-coding upstream 826543 24788395 ~ 24791263 (-)
G54450 NA non-coding upstream 851701 24813553 ~ 24847829 (-)
AMCG00009060 hltf other downstream 97564 23825229 ~ 23863035 (-)
G54003 LOC107575789 other downstream 1777034 22183088 ~ 22183565 (-)
G53809 NA other downstream 3688785 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 3898420 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 3990323 19961027 ~ 19970276 (-)
G54544 NA other upstream 1191414 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 1211825 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 1498754 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 1567977 25529829 ~ 25531566 (-)
AMCG00009121 NA other upstream 2560781 26522633 ~ 26532410 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016395 slc35g2a coding NC_007113.7 CM002886.2 24990398 ~ 24996441 (-)
grasscarp (Ctenopharyngodon idella) CI01000070_02716808_02718052 SLC35G2, SLC35G2A, SLC35G2B coding CI01000070 null 2716808 ~ 2718247 (+)