G54161


Basic Information

Item Value
gene id G54161
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23139455 ~ 23139692 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67700
caagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaagtacttatttccctcattaacatgcaaatcaatttataactttttttgaaatgcgtttttctggatttttttgttgttattctgactctcactgttaaaataaacctatcattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67700 True 238 lncRNA 0.35 1 23139455 23139692

Neighbor

gene id symbol gene type direction distance location
AMCG00009051 NA coding downstream 321462 22721882 ~ 22817993 (-)
AMCG00009048 pcolce2,pcolce2b,LOC107588030 coding downstream 473270 22648694 ~ 22666185 (-)
AMCG00009045 atr,LOC107677746,LOC107700496 coding downstream 532568 22559529 ~ 22606887 (-)
AMCG00009046 xrn1,LOC107563287,LOC107710613 coding downstream 582467 22540747 ~ 22556988 (-)
AMCG00009047 NA coding downstream 610191 22511192 ~ 22529264 (-)
AMCG00009054 plod2 coding upstream 238915 23378607 ~ 23402492 (-)
AMCG00009055 si:ch73-206p6.1,LOC107557560,LOC107679633,LOC107739143,LOC108272643 coding upstream 310853 23450545 ~ 23469100 (-)
AMCG00009057 zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562 coding upstream 505762 23645454 ~ 23656150 (-)
AMCG00009062 nck1b,nck1,LOC107734380,LOC107683484,LOC107713805,LOC107588047 coding upstream 754402 23894094 ~ 23914458 (-)
AMCG00009063 slc35g2,slc35g2b,LOC108263162,LOC107588046,LOC107687509,LOC103026733 coding upstream 820907 23960599 ~ 23961852 (-)
G54139 NA non-coding downstream 162773 22976461 ~ 22976682 (-)
G54124 NA non-coding downstream 312843 22793012 ~ 22826612 (-)
G54078 NA non-coding downstream 508947 22629331 ~ 22630508 (-)
G54008 NA non-coding downstream 835562 22303608 ~ 22303893 (-)
G53999 NA non-coding downstream 991891 22147308 ~ 22147564 (-)
G54167 LOC103376870 non-coding upstream 29747 23169439 ~ 23169829 (-)
G54168 NA non-coding upstream 40635 23180327 ~ 23191495 (-)
G54179 NA non-coding upstream 162762 23302454 ~ 23302685 (-)
G54273 NA non-coding upstream 677370 23817062 ~ 23819790 (-)
G54363 NA non-coding upstream 1138191 24277883 ~ 24278536 (-)
G54003 LOC107575789 other downstream 955890 22183088 ~ 22183565 (-)
G53809 NA other downstream 2867641 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 3077276 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 3169179 19961027 ~ 19970276 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 5270759 17868386 ~ 17868696 (-)
AMCG00009060 hltf other upstream 685537 23825229 ~ 23863035 (-)
G54544 NA other upstream 2013574 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 2033985 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 2320914 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 2390137 25529829 ~ 25531566 (-)

Expression


Co-expression Network