AMCG00009045 (atr,LOC107677746,LOC107700496)


Basic Information

Item Value
gene id AMCG00009045
gene name atr,LOC107677746,LOC107700496
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22559529 ~ 22606887 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009045
ATGGACCATGGACTGGAAATGGCAGCCATGATTCCTGCTTTGCAGGAACTTGCAAGTGCCAGCCCAGCAGAGTACAACAACGTCGTACAAAAACCACGACAAATACTATGTCAGTTTATTGACAGAATTTTGACTGATGTAGATGTCGTTGCCTTGGAACTATCCAAAAAGAGCATTCCAAAGACAGCCTGCGTCATGCTGCTTGATTTCATTCAGCATATCATAAAGTCATCACCTTTGATGTTTGTCAACCCTGCCTGCCAACTTGACCAATTTGGACATGTAGAAAGCAGTTCCAGTGATTTCGCTAAGTGGATTATCACTTGCCTTCTGCGGATCTCTGCAGCCCCCAATTGTGAGCTTCTGCATCAGAAGATTTCCTGTGTCCTCTGTTCTTTACTGCAACTGTTCAAAGCAAAGAGCCCTGCAATATTTGGGACACTAGTGAAGGAATTGCTAGACCTTTTCCGGGATCTGAGctcactgcaaaaaataaacgCACAGGGCTGTGTTGGCGGAGAGGCTTGCAGGTATCCGTTTGTGGTGGAGAGGTTCTCAGTGATACCAGATGGGGCTACTGAGTATTTGACACCTACGACCTTACATGTCTCATCAGTGGTATCTGTTGAAATGCTTGAAGCCACAGTCTTAACAGTTCTGGGGGACATTCTGCATGGTATTTTTTTCAGAAGAGAGGTCATTGTCATCTGGGAGTTGGGCTGCTCTGTTTTACAGTATGGAAGTCCTAAATTAAGGAGCAGAGCAATGGAACTACTGGCTCGGGTTGTGGAAATTGGGGGATTCCCAGAGAGCcatgcacatttgtttttctcagcatTTTTGCAGATCCTGAACACCTTCCAAACAGCTGACAAAGCTGACTTAAAACTGTATGAAAAACAGTTCGCAAGGTTGTCCAGCTCTGTATTTGTACATGACAAGGAGACGCACAAGAAGATTGAGAGAGTCTATCTGAACATGGTGATGGAGAAGCTTCACGAACTCATTGTGAATGGGCTTCTTCAAGAGCTAGAATCAGCTGAGTTGAAAAGGACACTGGGAgagttatttagttttgttatgaACTTCGTTCCACCGGGATACGAGTCTGCGGTGCAGATCAGAAAGGAGCGTGTTAATGAAGTCTGCAGAGCTTTAATCCATATGATTGGAACTCTGCAAAATCAAGAGGTGGACATGAAAGTGAAGAGTGAGGTGTGGGCTGCCATTGACAGTAAACTGATGGTGTTGGTGTCCATGCTGAAGGGCCAGGGAGGAGCCCAGACTATTAGTACCTTGGAGGGGATAGCTGTCATACTGCATCTGGCCGCTCTCTGTCACACTCACTGCTTCTCTCAGGCAGCCGTCAGTCACAGTGACAGAGGTCCAAAGACTAATGCCAATAGTGGAAAGACACCAGACACTGCAAATCCAGCCCCTAGAGTGCAGCTGATATGGATCCATGCTAAGTTGTTGTCCCAGGTCATCGAGAGCTGCAGGGTGATGCTGAGCTGCACAAACTTTGAAGATGAACTTGACCTGGCCACAGAAAGAGTCGTAAGGATAATTGACACCACTCTCTACATGAACGTGACCAGCCAGTTTGATGGGGTTCTGCTCAAGAGTCTTTGTGCCTTGCTATCATTACCTTGGGTTTATGAGCATTCAACACAATCAGTTTTTCAGTTGGCTGGCTTCACATCAAGCCTTATTGGGTTAACATTTCAGACACAAGCAAATTGTGTTTATCTGTTATCCTTACTGCCCAAGAAGACTTGTGCAGACTGGAGGTCATCAGTTTTCCGCTGGGCACTGCAAAGTAAAAGCAATGCTGTACGAGCTAGTGCAGTGAAAGCATTTCCTAATCTGCTTCACCATCTGGGAGGGAAGGCATACAGCCTCATACATGATGTTCtgctAAATAAACTCCAGGATAACTCTGTACAAGTGAAGAGGGAATTGGCAGGAATCACTGGACAATTGGCCTGCTGTCTTTCAGAGAGCTCCCAGCTCCGGATTCCACACTGTGTGCCCCCTCCACAGAACCTCCTCTGTAGTCACCTCACTGTAAATGCCACACACTCTGAAAGTGTTACCACCATCGGGGCTTCTATCTTTACTCCATTTTTGATGCTTCTTAAATCCGAGGTTGACACATCTGTGAAAAACGCTTTCATAGAAAATATTCCCCACCTGTGCAAACATGTGGAGCTGGGCAGTGGCGACCCTGACACAAAGGCTCTTGTCAGTGCTCTGGTCAACCTCATAGAGGACCCTGATGAAGAGGTCAGGATGCTGTTTGGTAAAAACATCAAACACCTGCTGGAGCCCTGCTCTGGAGACACCTATCTGAAGGAGAACGAGACTGAAATAGAGCTGGGAAGTCTACTGCGACAAGATTTTCAGGGACTGCACAATGAGCTGCTACTGCGTCTGGGGGAGCACTACCAGCAGGTCTTCAATGGGCTTGCAATTCTGGCCTCCTTTGCATCCAGTGATGACCCATACCAAGGACCACGGGATATTACAACACCAGAGCAAATGGTaGCTGACTATCTGCAGCCCAAGCTGTTGGGTATCCTGGCCTTTTTCAATATGCAGTTACTTAGTTCCAGTGCTTTAAACAGTTTGTTGGCACTCATGACGTTGATGGGGCCCAAGCATATTAGCTCAGTGAGAGTGAAGATGATGACCACACTTAGGACTGGCCTGAGATACAAAGACGATTTTCCTGAACTGTGCTGCCAATCCTGGCACTGCTTTGTTCGCTGCCTTGAAAAAGCATATCTGGGACCTCTCCTTAGTCATGTCATAGTGGCTCTTTTGCCCCTCATCCCCATTCAACCCAAAGAGACTGCTGTGATATTTCATTATCTCATTGTTGAGAACAGAGCTGCCAAAGGAGATCTTGTTTCTTTTGCTTTACTTCATCTCCTGCACTGCCTCTTATCTAAGGCAACTTTGGTGTCTGTAATGGCATACACTGAGATCCGAACCCTAGCTTCCTCCAGGGGACTGAAGCTGCAGTCCTTCTTCAGTCAATACAAAAACCCCATCTGCCAGGTAAGGACAATCCTATGCCTTTTCCCctccttttccttccttttgaAAGGCCAGCGTTTTAATGTACCTTCCCGGATGTGTATGCAGTTCCTGGTGGAGTCCCTGCATTCCAGACATGTGACGGCTCTGAGGACTACACCGGACCAGAGCAGCGAGGCTCTGCAGCAAGAGGCCACCCGCCAGAGAGAGCTGGCCCTCGACATCCTGTCTCAGGTGGCACATCGGACTCTGCAGGTGCTGTTGCCATACTTGGCTGCCCGGGCCAGTCCCACAGCCTCGGCACTAATCCGCACCATTGCCAAACAGCTTAACGTCAACCGACGGGAGATCCTCATCAACAACTTCAAGTACATCTTCTCCCACCTGGTCTGCTCCTGCGCCAAGGATGAACTGGAACGAGCTTTCCACTACCTGAAGCAAACCTCCAAGAGCACAGACTTGCAGACTGCTCTCCAGCTGTCAATGAGAGCCATCCAGCATGAGAATGTGGATGTCCGCATTCATGCGCTCACCAGTCTGAAGGAAATGATGTACAATAACCAGGAGAGGCTGTTGAAGTATGTGATGGACAGCGAGATGGTGGAGCCGGTCATCTCCCAGCTGGTGATGGTGCTGCTGAAAGGCTGCCAGGATGTGAGCCCAGAGGCACGGCTGTTATGTGGGGAGTGTCTGGGGGAGCTGGGGGCCATTGACCCTGGGCGCTTGGACCTGGCCACTGCTGACACACAGCGCGAGGGCTCCTCTACCTTTGTGAGTGGAGTAGAAGATGCCAACTTTGCCTATGAGCTATTGATTGAGCTGACCAGGGCCTTCCTTGCCTATGCAGATGATGTCAGAGCACAGGACTCTGCAGCTTATGCCATGCAGGAGCTGCTTGCCATATATGAATGCCGAGAAGGCAGGAACGACAGTCCAGGCCGAAGACTGTGGAGGAGATTCCCTGAGCAGGTGCAAGAGATACTGGAGCCCCATCTCAACAGCAGgtacaaGAGTTCTCAGAAAGTGTTAAAGTGGACCAAACTGAAGAAACCTATCTACTTAAGTAGCCATGGGAGCAGCTTTGCAGAATGGTCAGCAACATGGGCTGGCTATCTAATGACAAAGGTCAGGCATGAACTCGCCAGCAAGGTCTTCAACTGCTGCAGTTTCATTATCAAACATGACTACAAAGTGACCATATACTTGCTGCCACACATTTTGGTATATGTTCTTCTGGGGTGCTCTCAGGATGACCAGCAGGAGGTGAGCAATGAGATCATGGCAATCCTGAATGAAGATGATTCTCGTAATGGCAGGCTGCAGGAGAACACCTCTGGGTTAAGCCAACTGAGCACACAGACAGTATTTTCAATGATAGACCACTTGACTCAGTGGGCTAGGCACACCTCCCAGGTTCTCAATACTGAGAAGTGTGCTAGGCGTGGAGGCAGAGACCATCGAGAGCCAAGCACATCGTGCACAGAGAACAGTGAATATCAGAGTGTGGTAACATTCCTGAACCGCATACCTCAAGATGTTTTGGCTAAAGCCTCCTTCCGCTCCAAAGCCTACACCCGAGCAGTCATGCACTTTGAGTCCTTCCTCATTGAGAAGAAGCAAAACATACAGGACCACCTATCCTTCCTGCAGCCTGATGGAGTGAGCGGGGTGAATGCCCTGCGGAAAGAGGAACCGTCTCTCAGAGAGCAGATACTGGAGCATGAGAGCATAGGGCTTCTGAGAGATGCCACTGCCTGCTATGACAGGGCCATTCAGCTAGAGCCAGACCAGATTGTTCATTATCATGGGGTAATGAAGTCTATGCTAGGCCTTGGCCAGCTTTCTACAGTGATAACTCAGGTCAATGGAGTCCTTGCTAACagGCCTCAATGGAAGTCTGATCTTAACACATACAGAGTTGAAGCAGCATGGAAATTAACACACTGGGATTTACTAGGGGATTACCTGGCTTCAGCCAAGAATCAGGATGCTGCAGCCTTTCATGAGAAGCTCAAAATAATCCGGAAAGAACAGGTTGTTCCATTGTCGGCAGCCAGCTTCGAAAGGGGGACGTATCAGAGAGGATATGAGTATATTGTGAGGTTACACATGCTGTGTGAGCTGGAGCACACCTTCACAGAGCTGCAAAAGCAGTGGCAGAAGGATGGCTCCATTGAAGGGGAGCAGACACTCAACTGTCAGGCTCGCCTGGAGATGACCCAGAACTCCTTCCGGGCCAAAGAGCCAATCATCACACTGCGCAGAGCACTGCTCAGCTTGGGCAAAAGGCAAAGTGCCAGAGTGGCCAGGAAGGCAGGACATCACCAGACTGCCTACAATGCTCTACTCAATGCTAAAAATGCCAGCCCGTCAGAGTTCTATGTAGAGAAGGCAAAATGGCTTTGGTCCAAGGGTGATGTCCATCAAGCACTGATTATTCTACAGAAGGGAGTACAGCTGTGTTTCCCTGAAGATAAGCCACTAATTGACCCCAAAAACATTCAACTTAAGGGCAAAGCCATGCTTCTTGTGGGGCGGTTTATGGAAGAAACTGCCAACTttgaaagcaatgcaattatgaaaacatacaaGGATGTTACAAGTCTGCTGCCAGAATGGGAAGATGGTAACTTCTATCTGGCCAAATATTATGATAAACTTATGCCGATGGTTACAGACAACAAAATGGAGAAGCAAGGAAATTTGATTCGTTACATAGTCCTCTTTTTTGGCAAGGCTTTGCAGTTTGGAAATCAGTACATCTACCAGGCGATGCCAAGAATGCTATCCTTATGGCTAGACTTTGGAGCAAAAGTGTATGAGTGGGAAAAAActggccgcgCCGACAGACTCCAGATGCGCAGCGATCTTTCGAAAATAAATGCAACTATCACAGAGCACACCAAAAACCTGGCTCCCTACCAGTTTCTGACGGCCTTCTCCCAGTTGATTTCCCGCATCTGTCATTCCAATGACGAGGTCTTCACAGTGCTAATGGAGATCATTGCCAAGGTCTTTCTGGCGTACCCACAGCAGGCCATGTGGATGATGGCAGCAGTATCTAAGtcCTCTTATCCAACTCGTGTCAACAGATGCAAAGAAATCTTGCGCAAGGCAACTAACCTGAAGCAGTCTCTGGAGAAATTTATAGGAGATGCCACCAGACTGACAGACAAACTACTGGAGCTGAGCAACAAACCTGTGGATAGTAACAGCTCAACACTCAGCATGAGTGTCCATTTCAAAATGCTGAAGAAACTGGTAGAGGAACCCACATTTAGTGAAATCCTCATTCCCTTACAGTCTGTAATGATACCTACTCTGCCATCCACAGCTGGGGCCAACACCAATCATGACCCATTCCCTGGACACTGGGTATATCTCGCAGGCTTTGATGATATGGTGGAGATCCTGGCCTCTCTCCAAAAGCCAAAGAAGATCTCTCTGAAAGGCTCAGATGGGAAGTTCTACACAATGATGTGCAAACCCAAAGATGACCTGAGGAAGGACTGTAGACTTATGGAATTTAACTGCCTCATTAACAAGTGTCTGCGCAAGGACGCAGAGTCCAGAAGAAGAGAACTGCATATCAGGACCTATGCAGTGATCCCTCTGAACGAGGAATGTGGCATCATTGAGTGGGTGAACAACACAGCAGGGCTAAGGCACATACTTAACAAACTGTACAAAGAGAAGGGCATTTACATAACAGGCAATGAGTTACGCAAATACATGCTGCCCAAAACAGCCTCATTTCAGGAGAAATTGAAACTGTACAAGGAAGTTCTGATTGCCCGGCACCCTCCAGTCTTTCATGAGTGGTTCCTGAGAACATTCCCTGATCCTACCTCATGGTATAGCAGCAGGTCTGCATACTGTCGCTCCACTGCTGTAATGTCAATGGTTGGCTACATCCTGGGACTTGGAGATCGGCATGGAGAAAATATCCTGTTTGATTCTTTAACAGGAGAGTGTGTCCATGTGGACTTCAACTGTCTCTTTaataagGGAGAAACATTTGAAGTTCCGGAAGTGGTTCCATTCCGACTGACTCAGAATATGGTCCATGCCATGGGGCCAATGGGCACAGAAGGGCTGTTCCGCCAGGCCTGCGAGGTCACCATCCGATTAATGAGGGACCAGAGAGAGCCACTGATGAGCGTCTTGAAGACTTTCCTGCATGATCCCTTGGTGGAATGGAGTAAGCCTGTTAAAGGAAGTTCAAAATCACAGGTCAATGATACTGGAGAAGTGCTCAATGAAAAGGCTAAGACCCATGTCCTTGACATAGAGCAGAGGCTGCAGGGGGTGATTAAGAACAGAAACAAGGTGATGGGCTTGCCCCTTTCAATTGAAGGGCATGTTCACTACCTCATCCACGAAGCCACTGATGAAAACTTGCTGTGCCTCATGTATCTGGGCTGGGCTCCCTAT

Function

symbol description
atr Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within several processes, including determination of left/right symmetry; intrinsic apoptotic signaling pathway in response to DNA damage; and regulation of heart looping. Predicted to be active in nucleus. Is expressed in hindbrain neural rod; midbrain neural rod; optic vesicle; somite; and tail bud. Human ortholog(s) of this gene implicated in Seckel syndrome 1 and pancreatic cancer. Orthologous to human ATR (ATR serine/threonine kinase).

NR:

description
PREDICTED: serine/threonine-protein kinase ATR-like

GO: NA

KEGG:

id description
K06640 ATR; serine/threonine-protein kinase ATR

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009045 True 7476 mRNA 0.48 43 22559529 22606887

Neighbor

gene id symbol gene type direction distance location
AMCG00009046 xrn1,LOC107563287,LOC107710613 coding downstream 2541 22540747 ~ 22556988 (-)
AMCG00009047 NA coding downstream 30265 22511192 ~ 22529264 (-)
AMCG00009044 LOC107578566 coding downstream 72728 22475354 ~ 22486801 (-)
AMCG00009041 tbl1xr1,LOC103376174,LOC106584305 coding downstream 526422 21869612 ~ 22033107 (-)
AMCG00009039 NA coding downstream 1123107 21295543 ~ 21436422 (-)
AMCG00009048 pcolce2,pcolce2b,LOC107588030 coding upstream 41807 22648694 ~ 22666185 (-)
AMCG00009051 NA coding upstream 114995 22721882 ~ 22817993 (-)
AMCG00009054 plod2 coding upstream 771720 23378607 ~ 23402492 (-)
AMCG00009055 si:ch73-206p6.1,LOC107557560,LOC107679633,LOC107739143,LOC108272643 coding upstream 843658 23450545 ~ 23469100 (-)
AMCG00009057 zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562 coding upstream 1038567 23645454 ~ 23656150 (-)
G54008 NA non-coding downstream 255636 22303608 ~ 22303893 (-)
G53999 NA non-coding downstream 411965 22147308 ~ 22147564 (-)
G53955 NA non-coding downstream 750918 21808284 ~ 21808611 (-)
G53953 NA non-coding downstream 787538 21771646 ~ 21771991 (-)
G53918 NA non-coding downstream 1265628 21292475 ~ 21293901 (-)
G54078 NA non-coding upstream 22444 22629331 ~ 22630508 (-)
G54124 NA non-coding upstream 186125 22793012 ~ 22826612 (-)
G54139 NA non-coding upstream 369574 22976461 ~ 22976682 (-)
G54161 NA non-coding upstream 532568 23139455 ~ 23139692 (-)
G54167 LOC103376870 non-coding upstream 562552 23169439 ~ 23169829 (-)
G54003 LOC107575789 other downstream 375964 22183088 ~ 22183565 (-)
G53809 NA other downstream 2287715 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 2497350 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 2589253 19961027 ~ 19970276 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 4690833 17868386 ~ 17868696 (-)
AMCG00009060 hltf other upstream 1218342 23825229 ~ 23863035 (-)
G54544 NA other upstream 2546379 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 2566790 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 2853719 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 2922942 25529829 ~ 25531566 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_04754556_04784656 ATR coding CI01000004 null 4754556 ~ 4784757 (+)