AMCG00009055 (si:ch73-206p6.1,LOC107557560,LOC107679633,LOC107739143,LOC108272643)


Basic Information

Item Value
gene id AMCG00009055
gene name si:ch73-206p6.1,LOC107557560,LOC107679633,LOC107739143,LOC108272643
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23450545 ~ 23469100 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009055
AAAGTGTCGAGCATGTCCATTTTCAGAAGTTCAGAATTAGGTTACAGGAAAAGCATTATCTTGTAACTTGATACCTACACTTGAATTGAGTTTCGTTTGCACAGGAATGAGGTTGAAAGGATATACACAGTGCAGGGGAAATTGCGGTGAAATTAAGCACATTTCGGTCAATTGGTAAAACGTCGTGacgcatttacatttttattttttattttattttattttttgtttttttggatcTGATTCCTGATTTTGTAGCGAAGGCAGTACCGAACAGTATCATGTCACAGCTAGCTCAGCCTGTTACAAATGCAGTGCATCCTGTGCCCCAGCCACCAGATTGACCAGTTGCTCATTCAGCAGAAAGTAGAGCTTCTTGAAGTTCTTGTAGGCTGGGAGGGTAACaacaaatatgaaatcaaaAACACTATTGGGCAAAGAGTTTTTTATGCAGCTGAAGAGAATGACTGTTGTAACAGGAACTTCTGTGGACCAGTGCGTTCCTTTGTCATAAAGATTCTGGATAACTTCGGTCAGGAGGTCATCACTGTGACCCGTCCTTTAAGATGTGGTAGCTGCTGTTGTCCATGCTGTCTTCAGGAGTTAGAAGTCCAGGCCCCTCCAGGCAATCCAATTGGATACGTTATTCAAACCTGGCACCCATTCCTGCCGAAATTCACTCTTCAGAATGAACGAAGAGAGCCAGTGCTGAAAATTGTAGGCCCTTTCTGTGACTGCAAATGCTGCTCAGATGTTAACTTTGAGGTGAAATCTCTGGATGAGACTTCTGTAGTTGGCAGGATCTCCAAGCAGTGGACAGGTTTTGTCCGAGAGGCGTTCACTGATGCAGATAATTTTGGAATGCAGTTCCCTCTGGATCTTGACGTCAAAATGAAAGCCGTAATGATCGGTGCCTGTTTCCTCATTTTCAGTGCCATGGATGCTTACATGATGCCAGCACCCCCAACCCTGCCAGGCTGTCCCCCTGGTCTGGAGTACCTGACTCAGATTGACCAGTTACTTATTCACCAGAAAGTCGAACTTGTGGAAGgctttgaaaacaacaacaaatatgaaattaaaaactctCTGGGCCAGAATGTATTCTATGCAGTGGAGGACAATGACTGTTTAACTCGCCAGTGTTGTGGGCCTTTGCGTTCTTTTACCATTCATGTTTTGGATAACTTTGGCCAGGAAGTTATAAGTGTGATCAGACCGTTAAACTGTGACCGTTGCTGCTGCCCCTGTTGTCTCCAGGAGTTAGAAATTCAGGCTCCTCCAGGTAATACTGTTGGATACATCATCCAAACCTGGCATCCCTTCGTGCCCAAATTTaccattcaaaatgaaaaaaaggagCCGGTTCTTAAACTCCAGGGCCCTTTTTGTGGTTGGAGTTGCTTGCCCGACATTGACTTTGAGATTTTGACTTTGGATGAAACTGCTAAAATTGGCAAGATCAGTAAGCAATGGACAGGGCTTCTCAGAGAGGTGTTCACTGATGCAGATAACTTTGGAGTCCAGTTTCCAATGGACCTTGATGTCCGAATGAAAGCTGTGCTGATTGGTGGCTGTTTTCTGATTgATTTCATGTTCTTTGAACACAAccagtaaattaaatgttcagAACGGGATCTTGAAGATATCTCAGCATTTCAGAGAAATATTGTCTAACTGCTTATCCAACAACCTATTTTAAATCAACAGATCTTGTTGAATAGAGAAAAATGGGACAAAGAATGTGTAAACTGCTgaagacttttctttttcaacatTGTTAAACAGTTTGGCTGTGGGTATGCTAATGATATACAGAACTTGTGAAACAAAGTTGCAGTTGGTCTTGGAAATGTCAGAATATTTCTCCTGCTATgtcatatatgtgtataatgtgCTGTTTGTTTGACCTAAATACACAATCAACAACCAGCCAAGAAAGACTGCTAAAGTGCCAGTTCAACAGTAACAGTaatacatggtctgcaacagaTAGATTTTAATGGGCAAATGAAGATGAATTGTGGTATTTGGCAGGTTTGGAGCTAAGCTAAGTGGAATATTCAATCACAATTATGACACTACTATAACCACTAAGATTATAATACATGAACAATGTGCAATTTCAAATATGCATCAGATCTGTATTTCTGTGAGTTAGCCCTGGGAGGCAATATTTATAATGGGAAACCTACtatgcatttcttctgtttatgggcttttgtttaatgtgttgtAAACTGTTATTGTTCTGTATTATgcactgatattattatttgggTTAAGCTCTCCAATCAAGTGGAATTGTAACTAGATTTGTATGGGTTTGTAATATTTTtgacaagttttatttttctgtatgctttgtgttatttatttaatttaaaatattctttagaattttattttgaattggcTAGAACTGAAGAATTC

Function

symbol description
si:ch73-206p6.1 Predicted to enable phospholipid scramblase activity. Predicted to be involved in plasma membrane phospholipid scrambling. Predicted to be active in plasma membrane. Orthologous to human PLSCR2 (phospholipid scramblase 2) and PLSCR5 (phospholipid scramblase family member 5).

NR:

description
PREDICTED: phospholipid scramblase 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009055 True 2433 mRNA 0.40 13 23450545 23469100

Neighbor

gene id symbol gene type direction distance location
AMCG00009054 plod2 coding downstream 48053 23378607 ~ 23402492 (-)
AMCG00009051 NA coding downstream 632552 22721882 ~ 22817993 (-)
AMCG00009048 pcolce2,pcolce2b,LOC107588030 coding downstream 784360 22648694 ~ 22666185 (-)
AMCG00009045 atr,LOC107677746,LOC107700496 coding downstream 843658 22559529 ~ 22606887 (-)
AMCG00009046 xrn1,LOC107563287,LOC107710613 coding downstream 893557 22540747 ~ 22556988 (-)
AMCG00009057 zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562 coding upstream 176354 23645454 ~ 23656150 (-)
AMCG00009062 nck1b,nck1,LOC107734380,LOC107683484,LOC107713805,LOC107588047 coding upstream 424994 23894094 ~ 23914458 (-)
AMCG00009063 slc35g2,slc35g2b,LOC108263162,LOC107588046,LOC107687509,LOC103026733 coding upstream 491499 23960599 ~ 23961852 (-)
AMCG00009065 pccb,LOC106574468,LOC107688488,LOC107709888 coding upstream 582650 24051750 ~ 24062621 (-)
AMCG00009067 ppp2r3a coding upstream 607299 24076399 ~ 24088941 (-)
G54179 NA non-coding downstream 147860 23302454 ~ 23302685 (-)
G54168 NA non-coding downstream 259050 23180327 ~ 23191495 (-)
G54167 LOC103376870 non-coding downstream 280716 23169439 ~ 23169829 (-)
G54161 NA non-coding downstream 310853 23139455 ~ 23139692 (-)
G54139 NA non-coding downstream 473863 22976461 ~ 22976682 (-)
G54273 NA non-coding upstream 347962 23817062 ~ 23819790 (-)
G54363 NA non-coding upstream 808783 24277883 ~ 24278536 (-)
G54408 NA non-coding upstream 1158739 24627839 ~ 24710773 (-)
G54415 NA non-coding upstream 1195205 24664305 ~ 24666234 (-)
G54447 NA non-coding upstream 1319295 24788395 ~ 24791263 (-)
G54003 LOC107575789 other downstream 1266980 22183088 ~ 22183565 (-)
G53809 NA other downstream 3178731 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 3388366 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 3480269 19961027 ~ 19970276 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 5581849 17868386 ~ 17868696 (-)
AMCG00009060 hltf other upstream 356129 23825229 ~ 23863035 (-)
G54544 NA other upstream 1684166 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 1704577 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 1991506 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 2060729 25529829 ~ 25531566 (-)

Expression


Co-expression Network