RNA id: CI01000071_04903716_04959830.mRNA


Basic Information

Item Value
RNA id CI01000071_04903716_04959830.mRNA
length 1882
RNA type mRNA
GC content 0.49
exon number 16
gene id CI01000071_04903716_04959830
representative False

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 4903716 ~ 4959861 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGTTATGCGCCGACAAGCCCAACAAAAGAACAAAAAAAAAGAACAAGCCGCTGAACCTGAAGATACACAGCAGTGTGGCTGGGAGCTGTGAAAACTTGCCGACACAGCGCTCTCCTCTCCACTCCGACCACTCACTTCGCTCCTTCTTTTTCCCTAATTTTGTCCCTTCGACACCACCGGTTCACTCCGACACCCCCTCAGCAAATAAAACATTTACCTGCTGGGAGACGATGTGGGTTTGTCAGAGGTCCAGCACTCCAGAACAAAGATCATATCAAAGTTCTGATCTAATTTGGAACACTGTGTACATCCTCGATCCACCTGAAAGAAGCAGCCGAGCAGAATGCAGAGATACTCTGTCTGTTCCTCGCTGGTCCCCTCAGATACCTCGTAGAGACCTCGGCAACTCTATAAAACACAGAGAAATAGATTGGCAAATGCACAGTGACCCTTCAGAGGAACTCTATTGCAGGAGATTTGAATGGCCCTTTCATTGTGGAGAACGGCAAATGCGACTACATTCGCCAATGCATCCATATGGCCTTTGTCCTCACGTATATTTGTCAAGTGCGGGTGCACAGTTGAGCGCAAAGGAGATATTCAGAGATACTCGGTTACAATTAAATTACTCTTTACGGCAAAGTGTCTATCTTTGGGCATACGCTGCACATATCTGTCTCCCGATGAAAAGGTTTTCCACAAAGTATTGGATGTCGCAGACGTGTATCGTGTGCGGGAAAGGAATGCTATTCGGCTTGAAATGCAAAAACTGCAAATTGAAGTGCCACAACAAATGCACCAAAGAAGCACCGCCCTGTCATTTACTCATATACCACAGAGGAGATCAAGGAACATCTCAAGCTCGTCAGCTCGTCAGGACCGAGTCGGTACCATGTGACATAAACAACCCCCTCAGGTACTCAGACCTCCACATTAGCCAGACTCTCCCCAAGACCAACAAAATCAACAAGAACGAGGAAGGCAACGATGAGGCCGAGGGCTCAGCGGACGAGTTCGAAGAGATGAATCTCTCCCTCTTGTCCGCACGAAACTTCCCACGTAAGGCCAGCCAGACCAGCATCTTCCTGCAGGAGTGGGACATTCCCATGGAGCAGCTGGAGATCGGAGAGCTGATCGGGAAAGGCCGGTTTGGACAGGTCTACCATGGACGCTGGCACGGAGAAGTGGCCATACGACTAATTGACATTGAAAGAGACAATGAAGAACAGCTGAAAGCATTTAAAAGAGAGGTGATGGCGTACAGGAACACACGGCATGAAAACGTTGTCCTGTTCATGGGAGCATGTATGAGACCCCCTCATCTGGCCATCATCACCAGCTTGTGTAAGGGCAGGACCCTCTACTCAGTGGTACGAGATGCAAAAGTTGTTCTCGACGTGAACAAGACCAGACAAATCGCACAAGAGATGGTGAAGGGCATGGGCTACCTACATGCCAAAGGGATCCTTCACAAAGATATGAAATCCAAGAATGTATTTTATGACAACGGGAAAGTGGTCATCACTGATTTTGGCCTGTTCACAATATCTGGTGTTCTACAAGCAGGCAGCAGGAGAAAGGATAAGCTGCGGATCCCAAGCGGCTGGCTGTGTCATCTGGCTCCTGAGCTCATCCGTCAGCTCTCCCCTGAGACAGCAGAAAACCAGCTTCCCTTCTCCAAACAGTCTGACGTCTTTGCCTTTGGGACATCCTGCTGTTCTGTTGGGCGTATGAACAGGAAGAGCGGCCCAGCTTCTCCAAGCTCGTGGAACTACTTGAGAAACTGCCGAAACGCAACCGTCGCCTGTCTCACCCAGTACACTTCTGGAAATCAGCTGAGTATGTGAAATGAGCTAAACTCAAAAATGCCTGTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321220 lncRNA upstream 79928 4822773 ~ 4823788 (+) True G283442
TU321218 lncRNA upstream 85487 4817956 ~ 4818229 (+) True G283440
TU321192 lncRNA upstream 155374 4747579 ~ 4748342 (+) False CI01000071_04737911_04747060
TU321193 lncRNA upstream 155766 4747579 ~ 4747950 (+) True CI01000071_04737911_04747060
TU321172 lncRNA upstream 184794 4715415 ~ 4718922 (+) True G283401
TU321201 lncRNA downstream 3077 4962938 ~ 4965441 (+) True G283423
TU321200 lncRNA downstream 9207 4969068 ~ 4970189 (+) True G283422
TU321238 lncRNA downstream 22734 4982595 ~ 4989704 (+) True G283457
TU321358 lncRNA downstream 104771 5064632 ~ 5064913 (+) True G283557
TU321385 lncRNA downstream 105930 5065791 ~ 5066007 (+) True G283580
CI01000071_04851502_04865548.mRNA mRNA upstream 38168 4851502 ~ 4865548 (+) True CI01000071_04851502_04865548
CI01000071_04834539_04839129.mRNA mRNA upstream 64361 4834326 ~ 4839355 (+) True CI01000071_04834539_04839129
CI01000071_04825708_04831021.mRNA mRNA upstream 72649 4825708 ~ 4831067 (+) True CI01000071_04825708_04831021
CI01000071_04780189_04798898.mRNA mRNA upstream 104818 4780189 ~ 4798898 (+) True CI01000071_04780189_04798898
CI01000071_04751375_04752037.mRNA mRNA upstream 151274 4751169 ~ 4752442 (+) True CI01000071_04751375_04752037
CI01000071_04982029_04982493.mRNA mRNA downstream 21495 4981356 ~ 4982540 (+) True CI01000071_04982029_04982493
CI01000071_05002535_05056745.mRNA mRNA downstream 42328 5002189 ~ 5057408 (+) True CI01000071_05002535_05056745
CI01000071_05081168_05081463.mRNA mRNA downstream 121307 5081168 ~ 5082153 (+) True CI01000071_05081168_05081463
CI01000071_05082669_05087793.mRNA mRNA downstream 122439 5082300 ~ 5087817 (+) True CI01000071_05082669_05087793
CI01000071_05102723_05110135.mRNA mRNA downstream 142862 5102723 ~ 5110220 (+) True CI01000071_05102723_05110135
TU319744 other upstream 1847185 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 2075112 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 3526046 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 3981620 905217 ~ 922096 (+) True G280443
TU318001 other upstream 4100399 799775 ~ 799876 (+) True G280464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060043 False 1873 mRNA 0.52 15 NC_007116.7 12285726 ~ 12407194 (-)
bowfin (Amia calva) AMCG00018669 True 3908 mRNA 0.40 13 CM030135.1 17638267 ~ 17677169 (+)