RNA id: TU319758



Basic Information


Item Value
RNA id TU319758
length 236
lncRNA type intronic
GC content 0.39
exon number 1
gene id G282093
representative True

Chromosome Information


Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 3072020 ~ 3072255 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTCAAACCGGGGTCGGACACTGAAGAAGTTACAACTTTTAGAATGCAACTGGATGTTTCTGAATTGTTAGTGGGTAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATCAACTAGCATGTGTCGTCATGTTAATCTTTTGTGCAAATCCAATGTTGAATTGACCCTCGTTTGTGAATCAGTCCGACATAAAATGACGCCATGGCAACAATACTCTATTACAACAACTCTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU319754 lncRNA upstream 3121 3068605 ~ 3068899 (+) True G282089
TU319746 lncRNA upstream 13501 3058314 ~ 3058519 (+) True G282082
TU319740 lncRNA upstream 19548 3051781 ~ 3052472 (+) True G282076
TU319739 lncRNA upstream 20496 3051120 ~ 3051524 (+) True G282075
TU319636 lncRNA upstream 234717 2835565 ~ 2837303 (+) True G281976
TU319776 lncRNA downstream 45255 3117510 ~ 3117800 (+) True G282108
TU319795 lncRNA downstream 84587 3156842 ~ 3172793 (+) True G282127
TU319813 lncRNA downstream 126195 3198450 ~ 3198700 (+) True G282145
TU319853 lncRNA downstream 151734 3223989 ~ 3224221 (+) True G282183
TU319854 lncRNA downstream 151996 3224251 ~ 3224611 (+) True G282184
CI01000071_03062277_03064334.mRNA mRNA upstream 7314 3061838 ~ 3064706 (+) True CI01000071_03062277_03064334
CI01000071_03016024_03022596.mRNA mRNA upstream 49026 3014670 ~ 3022994 (+) True CI01000071_03016024_03022596
CI01000071_02960341_02966088.mRNA mRNA upstream 105574 2960037 ~ 2966446 (+) True CI01000071_02960341_02966088
CI01000071_02927971_02953988.mRNA mRNA upstream 117853 2926649 ~ 2954167 (+) True CI01000071_02927971_02953988
CI01000071_02838185_02847470.mRNA mRNA upstream 224409 2838148 ~ 2847611 (+) True CI01000071_02838185_02847470
CI01000071_03108610_03108994.mRNA mRNA downstream 36189 3108444 ~ 3108994 (+) True CI01000071_03108610_03108994
CI01000071_03329447_03356262.mRNA mRNA downstream 257192 3329447 ~ 3357152 (+) True CI01000071_03329447_03356262
CI01000071_03361493_03387786.mRNA mRNA downstream 289238 3361493 ~ 3387878 (+) False CI01000071_03361493_03387786
CI01000071_03414821_03439810.mRNA mRNA downstream 342566 3414821 ~ 3439810 (+) True CI01000071_03414821_03439810
CI01000071_03756518_03756925.mRNA mRNA downstream 682501 3754756 ~ 3757404 (+) True CI01000071_03756518_03756925
TU319744 other upstream 15489 3056084 ~ 3056531 (+) True G282080
TU319630 other upstream 243416 2804644 ~ 2804806 (+) True G281974
TU318234 other upstream 1694350 1375724 ~ 1375792 (+) True G280680
TU317961 other upstream 2149924 905217 ~ 922096 (+) True G280443
TU318001 other upstream 2268703 799775 ~ 799876 (+) True G280464

Expression Profile