RNA id: CI01000072_04514012_04539785.mRNA


Basic Information

Item Value
RNA id CI01000072_04514012_04539785.mRNA
length 2351
RNA type mRNA
GC content 0.43
exon number 8
gene id CI01000072_04514012_04539785
representative False

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4512778 ~ 4539876 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTATTTCTTTATTAATTCTTTATTAATAAATAAGCTTCAGGAACTTTTTAAAATAAATTTGCATCAAGGTTTTATAGTTTGTATAATACAATGAATATAATCATTATCATAATTGAGCCAGTATCTGTGAAGAGCATATTTTGGAATCCAAAATTTGGCAAATGTGATCACTCCGGGGAAATAGAGCAGAGAGGAAACTACGTGCCTTCACCGAGCAAGGGCTGTCTGGTGTCATGGCAACCAGTGCGGATTACCCCACCCTCTCCAATCAGCCTCGAGAGGGAGGAGGAGGAGAAAAGGATGGAGAGAGAGTCAGGAAGGGCTGAGGACAGGCGGATACTAGGAGTCCAGCTTTCAACCAATAGTGCACAGGCCAGGAATGGGTGGAATGTGTTTGCACTGGCAAAGGGGAATAACAGTAAAGATAATGGTAACAATAAGCATGTGCGTGTTTCTGGTGGGTACTACCGTCTGCTGCAGGCCTGCTTAAGGGAAGCTGGCATACTAGAGAGTATTTACCACACTTTTAAGGCTGTAGTTTTCTTTAGTGTGTTTGCAACAGAGGGGTTAATTAAAATTTGCACCCTCCAGTTTTGTAGCACGAAGCACAAAGTCATCATTCAAATAACCAAGCAACTGAACACAAGTTCAGAAAACATCACTGTCCCAAAAAGACAGAAATTTGACATCAAACAGACTCAGGTCTACACCAAACACTGTAGAGAACTACACTTTGCAGAGAAGAGCATACTGTGTAGCCACATCCAGCTCAGCCTGACCTTCGCCGTCCTTGGCGTTCCAACCGCGAATAAGCGAGAACAAGCAGACTTGGAAGACGAGAGCTGGTTGAATAAAGCCGTGAGGAAAGAAAGAGAGGATTTCATTGTGTTTGTCTTAAACATATCCTCATCGGTCAGCGATCTGCGGCTGAAACGTAAAAACTCCAAAAATGATAAGCTCAAACGACGTGAAACTTTAGAAGAGGAGCGGCGGGAGCAGCGGAGGCGTGTGGGGTCCGGGGCAGGTTGCAGCGGCCCCATACAGGCCCCATACGGCTTGGTCTCAGAGCAGAGAGGCACAGAGGTGGCTGTGCAGGAACAATGGCTCTCTTTGTAAGCCGGCCTGGCTGTGCAAAGCCACAAGATGTCTTCCCCATATGAAGCTGATCATTGTTCCCTCTCCTGCTTTCCCTTTTCTTCCTTTCACTGGTTTAAGCAGCCTGTCCTGCTTGCTGTCAGCCTGACATGTCTCTCTCCCCAGGCACCCCAACAACCATTCAACACAAATATAAAGAGAAGTCACTAACACTTCCATCCTGCGATCACACTTGTGTGTTGCTCCCTGTGTTTGTTTGTTTGTTTGTTCACTTTGACTGCCATATGCTCAACCATGAGAAGAAGAGACACACTTTGCCTGCTGTTCCCTAGTGTTGGCATGTTTAGTAGAAACAACAACAAACACAACTTATGTGCTTATCTCATCTGTACTTTTTTCTTTTCTTTTTTTGGCGGAGGGAGTTTGGCGCCATGTTCCTGCAATGCATCTTTTAACACCTGACAGACAATGAATGTGAGGTCATTCGCAGGGTGGTGCGGTATTAGGTCTCGGATTCCTCTCGACATGCATCATCAGGTATGCAGCATTTTTTGGACGATCGTTGTATCCGTTTCATGGAAGGAGTCGTTGGGCGTGAGACAGAAGAGCGTACGGTTCGGTTTCAGCCTGCTTTCTAAACCTGGCCATATGCCCCTTGTGCCTATTACCTTTCTCCTCCCTGATCTGAGCACTGAACAGATAATACTTATCCATATGGCAGAATATTACTTACAATGTTGCTTACAGGGGAATCTGAAGCGCAGGCGGCCTGTTGGTTCAGACCGTTGGTCTGATCACAGTGGTCAACTCATTCAGAGGTCATTAAACTGGGGGCTGGTAATCCCAGGGTACCACAAGGCGGTGCTAGGGGGTCTGTGAAAATAAAATTTAATGTAAAAAATGTATTTTTAGGGCTGTCATAGTTAAAATTGGCACTTAAGATAATAATAAAATATGTTTAACTAAAATGTTTTTTTTTTTTACATCACCACATTTTATAATAATATCATTTTATTCTGATTCCGAATGATTGGTCCAGAATTATTAAATTAAATGTAAAGTAAATGTATACACACACACACACACACAAATATTAATGAACAGCACACATTTTTTTGGCAATTCGGTAACCAAATTCGGTAATATTGTTATTTCATCCTGCTTTCTAAACGCTGGTCAGAAATCATGAGATTAATTGTGATTATATTTTTTTTATTCTATTGAGAGCAGTTTTTAACAGTGAGAAGAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325354 lncRNA downstream 2145 4503433 ~ 4510633 (-) True G286994
TU325432 lncRNA downstream 81473 4430911 ~ 4431305 (-) True G287072
TU325431 lncRNA downstream 81920 4430643 ~ 4430858 (-) True G287071
TU325384 lncRNA downstream 90109 4422374 ~ 4422669 (-) True G287024
TU325420 lncRNA downstream 90929 4421336 ~ 4421849 (-) True G287060
TU325387 lncRNA upstream 82031 4621907 ~ 4685983 (-) True G287027
TU325303 lncRNA upstream 83735 4623611 ~ 4626334 (-) True G286959
TU325315 lncRNA upstream 104084 4643960 ~ 4677446 (-) False G286964
TU325318 lncRNA upstream 104084 4643960 ~ 4662577 (-) False G286964
TU325386 lncRNA upstream 110897 4650773 ~ 4672927 (-) True G287026
CI01000072_04315603_04316880.mRNA mRNA downstream 195898 4314911 ~ 4316880 (-) True CI01000072_04315603_04316880
CI01000072_04284927_04303593.mRNA mRNA downstream 209185 4284426 ~ 4303593 (-) True CI01000072_04284927_04303593
CI01000072_04207000_04210775.mRNA mRNA downstream 301700 4206961 ~ 4211078 (-) True CI01000072_04207000_04210775
CI01000072_04197826_04201434.mRNA mRNA downstream 311344 4197826 ~ 4201434 (-) True CI01000072_04197826_04201434
CI01000072_04191370_04195085.mRNA mRNA downstream 317693 4191370 ~ 4195085 (-) True CI01000072_04191370_04195085
CI01000072_04577347_04600719.mRNA mRNA upstream 37173 4577049 ~ 4600719 (-) True CI01000072_04577347_04600719
CI01000072_04602970_04610481.mRNA mRNA upstream 62973 4602849 ~ 4610481 (-) True CI01000072_04602970_04610481
CI01000072_04613981_04618187.mRNA mRNA upstream 73564 4613440 ~ 4618187 (-) True CI01000072_04613981_04618187
CI01000072_04796909_04805902.mRNA mRNA upstream 256904 4796780 ~ 4805902 (-) True CI01000072_04796909_04805902
CI01000072_04810045_04816219.mRNA mRNA upstream 270020 4809896 ~ 4816492 (-) True CI01000072_04810045_04816219
TU325381 other downstream 118555 4386145 ~ 4394223 (-) True G287021
TU324366 other downstream 536711 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 536776 3970270 ~ 3976002 (-) False G286205
TU324367 other downstream 536776 3970270 ~ 3976002 (-) False G286205
TU324368 other downstream 536776 3970270 ~ 3976002 (-) False G286205
TU325650 other upstream 840844 5380720 ~ 5382001 (-) True G287264

Expression Profile