RNA id: CI01000091_00835232_00837630.mRNA


Basic Information

Item Value
RNA id CI01000091_00835232_00837630.mRNA
length 429
RNA type mRNA
GC content 0.47
exon number 3
gene id CI01000091_00835232_00837630
representative True

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 835189 ~ 837725 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGGTCTTTCTATTGCTCTGTACTTTTTCAGATGTAAAGGTTTTCATTCCTCTTCACTTATTCCCTCCTCCTGGATCACAGACGCTACTCTCACCATGGGTCCTGGTAGAGGTCAAACGTCTGTGCTAAATTATGAGGACAGGGCCAACCCATCCACACCTCCAGCTTATGAGTTTCAGCTCTTGGTGTATGTACAAGATGGTGTGAAGAGGAAAGCTCAGTGGAGACGGGCTGAAGTGGGCGGCACAAACCAACTGAACAAAAGGCCAAGATGTTGGGAGCTAGTGCCTGGTGTTTGGAAGATAAAAGGCCTGGAATCGAGCAAAATTTCTGCCTTGCCACTGAAAACCTCCAATGCTCTGACATGTCTGTCAGGCCTCATTTAGGTTTAAACTGCCATGGTAAACTTCGGCTGCCTTTTGCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344277 lncRNA downstream 207748 626991 ~ 627441 (-) True G303077
TU344207 lncRNA downstream 444224 369963 ~ 390965 (-) False G303019
TU344208 lncRNA downstream 457649 369963 ~ 377540 (-) True G303019
TU344205 lncRNA downstream 466024 368087 ~ 369165 (-) True G303017
TU344183 lncRNA downstream 501257 333688 ~ 333932 (-) True G303005
TU344330 lncRNA upstream 175735 1013460 ~ 1013753 (-) True G303123
TU344340 lncRNA upstream 214798 1052523 ~ 1052915 (-) True G303133
TU344345 lncRNA upstream 222821 1060546 ~ 1060765 (-) True G303138
TU344355 lncRNA upstream 237655 1075380 ~ 1075589 (-) True G303148
TU344375 lncRNA upstream 253913 1091638 ~ 1092387 (-) True G303162
CI01000091_00797527_00799745.mRNA mRNA downstream 35444 797527 ~ 799745 (-) True CI01000091_00797527_00799745
CI01000091_00774690_00775320.mRNA mRNA downstream 58745 774156 ~ 776444 (-) True CI01000091_00774690_00775320
CI01000091_00712098_00724120.mRNA mRNA downstream 110815 711516 ~ 724374 (-) True CI01000091_00712098_00724120
CI01000091_00649152_00693081.mRNA mRNA downstream 142108 648440 ~ 693081 (-) True CI01000091_00649152_00693081
CI01000091_00637317_00642235.mRNA mRNA downstream 192954 637168 ~ 642235 (-) True CI01000091_00637317_00642235
CI01000091_00848463_00862551.mRNA mRNA upstream 10593 848318 ~ 864129 (-) True CI01000091_00848463_00862551
CI01000091_00950747_00956215.mRNA mRNA upstream 112879 950604 ~ 957949 (-) True CI01000091_00950747_00956215
CI01000091_01183128_01183960.mRNA mRNA upstream 345370 1183095 ~ 1183960 (-) True CI01000091_01183128_01183960
TU344246 other downstream 272245 474602 ~ 562944 (-) True G303047

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019112 True 4619 lncRNA 0.37 1 NC_007126.7 2323666 ~ 2328284 (-)