RNA id: CI01000091_00950747_00956215.mRNA


Basic Information

Item Value
RNA id CI01000091_00950747_00956215.mRNA
length 2384
RNA type mRNA
GC content 0.39
exon number 5
gene id CI01000091_00950747_00956215
representative True

Chromosome Information

Item Value
chromosome id CI01000091
NCBI id null
chromosome length 1322612
location 950604 ~ 957949 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCGAAAGGCCTATTATTCGAAAAGCAGCAAAAAGTTATTATTCTATTTTAATTGACCAAGCTAAGCATTTCACCCATCTCACACGAAGATAATAATTAGTAATAATAATAATAATAATAATAATTAATAATAATAATAGGCCTATGCTATTTCATTTTTTATTCAATTAGCCTAAATGTTAAGTAACGTCATAGGCCTATGAGTGGGTGTTTGTACAGATATATCTAAAAAAAGTGCAGTTTTGAGGCAATTGTACATTTATGTAATCTGTAGTTGCTGCTTGTATGTTGATTAAACAATATTTTGATGATTAGACGTATCTTCAAATCTTTAATTTGATGTGAGCGTTTGTTTCTTCAAAAGGGTCTGAACAATTTAAAGTCTGCTTCAGTCTGACTTTTAAAAAAGCATTTTGTGCAAGTAGTCGAGCTTTTACCTTCAACATAAGACAAACCATCTTTAGCGTACCTTCACTAAATATTTTTTTCCCCAAATTTGTCTATAGCTAGCTAGATCCCACGCAGTCATAGTCTATTGTAATTTTCTTATTTTTGCCTTGATCAAATGCGACAGAAAAGCCTTGTCCTCCGTAACACATTCCGACCAACAAAAAAAAAAAGAGAAAAAAGTAAAGATTAACCTGATCTGACATTTTTAATAAAACATTTCACTCAGCCTGCAGTTTCTCAATACGTAAAACATCAAACAATCCAAGTTCAAAGAATCAAAATTGGTCTTGTGACTGTGTATCTTATAACGACCTCGTCACTGAGAAAAAAATGTTGTATTTTACGCTTATCTTGCGCTACCCTGACAAGAAGTTGAAAGCGACTGACGATCATGTTTGATTTGTAATGCCTGCTGGCTGCGCGCGCATCGATGATCTCCAGACCGGTTACTTCAGTCTGTTCATCGGCTCATGGCGCTGCTGTGTGAGTTGCTGTTATGACACAATAGGAGTGTGTATCGTTAACTAGGTAAGAGTATGAATATAGATAGAAATATTAGTCATTTTACATATAACGTAAAAATATATTAGCAGGCGCGCTATTTATATGTTGCGTAACGTGTTAGAGATAGCGCCTGGAAATGTGAATGAAATAGAGCTAGTAAGACTGACAACATTTGGTGTTGAAATCTTTAGCATGTAAAGGGACGCAATTTTCATATTCGTATTTCCAAGTTCTGCCGTCGTTTCCTTCATGAAATAAAGCACTTTAACTGTAAACGGTAACGATGGCTCTAAAAATACTACCTGTCGGGATGCGTTTCTAACGCAAGTTTCGCGCAGTTTTAAGGTTATATTTAGAATTTAGTACAGCCTTAGACCACGTAAAAAGTAGCACATTCTGTTTTTAACACATTTCTCACTGTGGTGCTACACACCGACAGTGTATGCAAATTAACAATCATTATGTTTTGCCGTTCTTTTCAGCTCATGTTACTGTGTAGTAGACTTCAAATAAGAGACTCTAAGAATTTTATGTTAGATTAAGTAAGTGTAATTAAATTTTAATTCAGAATGGGGTCTTCACAGCTCTGTAAACGTAATAAATTTAATTTGCATCCTTAACAGACACATACATCATGTGTTGCTTGAGCTACTGAATCACAGTAACAGTCTGAGGAAAAAGCAAAAAACATTTCTGATATCTGACACACATTTTTGTGTCCTAACATCAATACTTTTGTACTCCACATCTCCCCATTTAACCCAGTGACTGGAGTGAACATGGGCCGGCACTCCTCAGACAGTGAGGACAACAGTCGAAGCCGGAGGAAGAGGAGACAGAGACAGCGCTCTTCCTCCTCCAGCTCCTCTGGAAGCAGAGTGACCAGCCGCAGCAAACACTCCCGGAGACGAACTCGCTCCAGAGACCGAAACAGAGTCACAGACAGGAGACATTTTATGCCCTCATTAAATTCACCTGAATTGTGTGAACTCTGCTGCGCTTTCAGCATTGCTCTGTTTGTGATCCCTGACCAATGGCAGGTTTGCTCTGTTTACATGGCGCAGGATTATCTGTTTGTCCAAGCAATGGAGGGTGGCACAGAAATCGTTCCAACAGTAGCTCTTCCAGAGGGTCCAGTCACAGGAGGCGGAGCCGAAGCACAGATAGGGGGCGGAACCATAGGTCCCATAGATCTGGATCCCGCAGCCGAAATAGGAGAGCCACTCACTCTCACAGCTGCTTGTCCTGTGCACATAGATACTCACACTCATTACAGGGGTTATTAGTGTAGATTATTATTGTTTTTGTCTGTATTAATTAAGTACTGGCACAAGCACCCTTGGGTCAGTCCACGTTTGCCTGCCCTTGTGCCTGTTTGGAGCTTGGAAGAAAAAGGGGGCACTTAGGTTGATGAATTAATGCAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344277 lncRNA downstream 323163 626991 ~ 627441 (-) True G303077
TU344207 lncRNA downstream 559639 369963 ~ 390965 (-) False G303019
TU344208 lncRNA downstream 573064 369963 ~ 377540 (-) True G303019
TU344205 lncRNA downstream 581439 368087 ~ 369165 (-) True G303017
TU344183 lncRNA downstream 616672 333688 ~ 333932 (-) True G303005
TU344330 lncRNA upstream 55511 1013460 ~ 1013753 (-) True G303123
TU344340 lncRNA upstream 94574 1052523 ~ 1052915 (-) True G303133
TU344345 lncRNA upstream 102597 1060546 ~ 1060765 (-) True G303138
TU344355 lncRNA upstream 117431 1075380 ~ 1075589 (-) True G303148
TU344375 lncRNA upstream 133689 1091638 ~ 1092387 (-) True G303162
CI01000091_00848463_00862551.mRNA mRNA downstream 86475 848318 ~ 864129 (-) True CI01000091_00848463_00862551
CI01000091_00835232_00837630.mRNA mRNA downstream 112879 835189 ~ 837725 (-) True CI01000091_00835232_00837630
CI01000091_00797527_00799745.mRNA mRNA downstream 150859 797527 ~ 799745 (-) True CI01000091_00797527_00799745
CI01000091_00774690_00775320.mRNA mRNA downstream 174160 774156 ~ 776444 (-) True CI01000091_00774690_00775320
CI01000091_00712098_00724120.mRNA mRNA downstream 226230 711516 ~ 724374 (-) True CI01000091_00712098_00724120
CI01000091_01183128_01183960.mRNA mRNA upstream 225146 1183095 ~ 1183960 (-) True CI01000091_01183128_01183960
TU344246 other downstream 387660 474602 ~ 562944 (-) True G303047

Expression Profile