RNA id: CI01000092_00579690_00648591.mRNA


Basic Information

Item Value
RNA id CI01000092_00579690_00648591.mRNA
length 3149
RNA type mRNA
GC content 0.49
exon number 24
gene id CI01000092_00579690_00648591
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 579190 ~ 648591 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTCAGCACTTGTTGCAGTGGGAAGATTTTCTGGGTACTCAAAACAGCTTCCTGGAGGTTGACGTGGATGTTGATGATGGCAGAGACTAAAGCAGATCTGTCAACTGATGCTTCAAACCTTCACATCTCTAACAGCAGCGGGAATGTGTCCTCACAGACCAACAACCCTCTGTCCAGAAAACTCAACAAGATCCTGGAGACCAGGCTGGAAAATGACAAGGAGATGCTGGAAGCGTTGAAATCTCTCTCCGTGTTTTTCACTGAGAACAGTCTGAGAACCAGGAGGAACCTGCGGGGAGACATCGAGAGACGCAGCCTGTCCATCAATGAAGAGTTTGTACGGATATTTAAAGAAGTGACTGAGGAGCTGGAGAGTGTTCATGAAGATGTTCAGGCCATGAGCTCCTGCTGTGAAGAAATGACCAACAGATTAAAGGCAGCCAAAGAACAAACCCAGGACTTGATTGTGAAAACCAACAAACTTCAAGGAGAGAAGGAATTTGGCTCTAGGTCTGAGACTCAAGAAGCGAGAGTCCATCGTATCTCTGACCTTGCGGAACGGCCCTTGATTTTGGCACCAAAGGAAATGCTGACAGCTGTGATGGACAGCTGGTGTCTCCACGCTCTACTACCATTCACCCTGTACTCGTCCAGCAGGAGAGTTTGTCTAAATCCACAGAGTGACATACAAAGACAGACAGGGACATTGCCTGTCTCAGTGACATTTTCATCAGCCAGATGGGATTGTGCCTGCTTGTCCAGCTGCTTTTTAACCTTGCCTGACCGTGTCTGTCCCCAGAGGGACAGCTGTGCAAGGGACAGTCATCGGTTGGAGGTTCGAGCTCAGGTGGCCCAGGCATTCCTGTCAAAGTTCCAGCTGTCCGTCGCCGAGATGGCAACGTTACGCTCCGCACGAGATGGACCCATCACAGAGGACTTCTTCAGAGCGCTGAACCGTGTGAAGAACATCCATGAAGATGTGAAGGTCCTACTGAGGACCAACCAGCAAACAGCCGGGCTGGAGATCATGGAGCAGATGGCTGTGTTACAGGAGACGGCATATGAGCAGCTCTATCGCTGGGCTCAGAATGAGTGCAGAGGGTTGACTCAGGAAACATGTGATATTCCTCCTGTGTTGAGTCAGGCTATGGAGTCTCTCCAGGATCGGCCTGTTCTTTATAAGTACACACTGGATGAGTTCGGAACGGCGCGGCGTTCTGCCGTGGTCCGAGGCTTTATTGACGCCCTGACCCGCGGAGGCCCGGGTGGCACCCCAAGACCCATAGAGATGCACTCTCACGATCCGATGAGGTATGTTGGGGACATGTTGGCCTGGCTTCACCAAGCCACAGCCTCAGAGAAGGAGCACCTGGAAGCTTTGCTCAAGCAGGTTACTGTGCCAGGGGTTGAAGAAAACATGCAGGAAGTAGTTGGCCACATCACCGAAGGAGTGTGCAGGCCACTCAAGGTGCGAATCGAGCAGGTGATCATTGCAGAGCCCGGTGCTGTTCTTCTGTATAAACTCTCCAACCTGCTCAAGTTCTACCATCACACCATCAGTGGCATCATGGGTACCAGCGTTTCATCTCTATTGATGACCATCGATGAGATGCACATGCTCAGTAAGAAGATGTTCTTCAACAGTCTTAGTCTCCATGCCAGTCGCCTTATGGATAAACACTCTAATCAAATCACCTCAGGCTTAGGACGTTACGTATCACTCCCTGACGTCACTCAGTGCCAGGAACACCAGGCCAAGCTAATAAGCGATATTAGAGGCAGCAGAGCCTTAGGTAGTGTTCGCGTAGCAGGGTGTTTATTAGTCAGCCTTCAGAGAGAGGTTTTGGCCTCCCATGATTCATCAGTTCTGCCTCTTGATGCCCGTCAGGCTGACTTTGCACAGGTGTTGTCCTGCATCCTTGACCCATTGCTGCAGCTCTGCACGGTATCAGCCAGTAACCTGGGCACAGCAGATATGGCCACCTACATGGTGAACTCCCTCTACATGATGAAGACCACACTGGCACTCTTTGAGTTTACAGACAAACGCTTGGAAATGCTGGAATTTCAGATTGAGGCTCACTTGGACACTCTAATCAACGAGCAGGCGACGTTCGTGCTGACCAGAGCTGCACTGAGTCACATCTACAGCTGTGTCCAGCAGCACACGGCAGAGCAGGGTCCCTTGGCCAACCTCCCTGGCATGGACAGCACATCCTTAAAAACAGCAATGGTTCAGTTTGACCGTTATTTGGCATCTCCTGATACACTTGTGATGCCGCAACTCAACTTCCTGCTCAGTGCTGCTATCAAGGAGCAGATCTTCAAACAGTCCACAGAGCTGGTGTGTCGTGCGTATGGAGAGGTGTATAAAGCTGTCACCAACCCTACAAACGCCTATAAAGACGCTGAGTCTGTCCTGCACAGATCTCCACAGCAGCGGCCCAATGGCCAGTCACGCCATCCTTTAATTGCCGACAAAACGCCTGCCAGTGCTCGTTCGCCAACTAAATTTAGCAAAACACTGAAAAACAGCAGAGAAAATAAAAGCAGTATTACTCTCAGACTTTTAATAGAAGTTTGTACTAAATCTGAAATGAAAGCAGATGCAATAGTAAGCCTCGCAGAAGTGCAGGGTAAAGGATAGAAGAGCGTTAGGGTGTGAGGAGACTACAGTGAACTCAGTGTGTGAGAGGCGCTGGGGGCCACATGGCCTCTCATCTGGGGGAATATTTTGAGCATGTCACATGGCCGCATTAAAGGGACTCTCCCCGCGGTGCCTGTAGCCAAGAAGCCCCTCACATGCCTCGCATTCAGCTCGAGGCTTTCAACTAGTGAAAAGCAAAGTCAAGTGAAGTACAAGTGTGACACTGTGGTGTGGTTTACTGTGAAATGGGTTATGAATATAGACAACTATTTTTAACCCAGATCACATCTGTGGGAGGCACGGAAACCCATTTTGGTTATCACACAGCATCTAAACCTCCAGCTGAAATGAAAACGTTTGTGTGCAGTCCAGTGTCAGTATGAGTTGAGCATTTGCTTTTCTACATTCACTGGCTACAAGAAGTGTTCAAACACTGAAATACATTTAAGTTAACTCAAGTTAAAGTATGAATACTGTAAAAGTATCAAGCAAAAAATAAA

Function

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process

KEGG:

id description
K20293 COG6, COD2; conserved oligomeric Golgi complex subunit 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345517 lncRNA downstream 15299 563555 ~ 563891 (-) True G304091
TU345512 lncRNA downstream 15793 557708 ~ 563397 (-) True G304086
TU345511 lncRNA downstream 45938 529353 ~ 533252 (-) True G304085
TU345598 lncRNA downstream 56818 522065 ~ 522372 (-) True G304154
TU345596 lncRNA downstream 58605 519836 ~ 520585 (-) True G304152
TU345664 lncRNA upstream 129121 777712 ~ 777947 (-) True G304218
TU345672 lncRNA upstream 141215 789806 ~ 790021 (-) True G304226
TU345717 lncRNA upstream 237607 886198 ~ 886555 (-) True G304260
TU345721 lncRNA upstream 241113 889704 ~ 890029 (-) False G304261
TU345718 lncRNA upstream 241194 889785 ~ 890029 (-) False G304261
CI01000092_00508717_00509840.mRNA mRNA downstream 68862 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 70666 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 150570 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_00409098_00411916.mRNA mRNA downstream 167274 408853 ~ 411916 (-) False CI01000092_00409098_00411916
CI01000092_00335844_00338581.mRNA mRNA downstream 240609 335326 ~ 338581 (-) True CI01000092_00335844_00338581
CI01000092_00847979_00851661.mRNA mRNA upstream 198707 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_01054403_01069241.mRNA mRNA upstream 405755 1054346 ~ 1069241 (-) True CI01000092_01054403_01069241
CI01000092_01086701_01097333.mRNA mRNA upstream 437813 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 449593 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01110360_01113717.mRNA mRNA upstream 461688 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
TU345836 other upstream 406713 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 409734 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 409776 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 409776 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 438071 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017672 False 3885 mRNA 0.49 19 NC_007126.7 3454529 ~ 3534705 (-)
bowfin (Amia calva) AMCG00016056 True 1287 mRNA 0.54 12 CM030122.1 4160355 ~ 4188956 (+)