RNA id: CI01000092_01270604_01273133.mRNA


Basic Information

Item Value
RNA id CI01000092_01270604_01273133.mRNA
length 1814
RNA type mRNA
GC content 0.38
exon number 2
gene id CI01000092_01270604_01273133
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1269745 ~ 1273133 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCGATCATGGACCAGAACACAACCAATTTAACTCAAGGATCTTGTGGCTTATCTGAAATGCCAGCTCGTACATTCTTTATATCTGTATACTCACTGATTTTTCTGGCAAGCCTGGTACTAAACAGCCTTACAATATATGTGTATTTTTGTAAAGATACAAATCAGTCCAGCATCACAGTCTATCTCAAGAATCTGGTTATAGCTGACTTGTTTGTCTGCCTGTGTTTGATATTACGCATTGTCAAATATGCAAGCACTTCAGTTGAAATTCTGCGTATCTACTGTATGTTTGCTGCTCCAGCTTCATACCTCAACATGTACTCCAGTATTGTCTTCATGGGCTACATTGCTGCAAACAGGTACATGAGAATTGTACGGCCACTGGAGACTCACGTGTTGCAAACAGTCCGCTCGACCAACTACATCTGCATAGTGACCTGGGCTGGCCTGTTGTGCTTTGTTTGTGTCTACATTGCTGTTTTTGTCAGTTCTGATAAAGAAAACTCTCCCCACAGTGGTTTCAACTGTGAAATCTTTCATAACAGCTTGCTCAAACAGATCTACTTGGTCATGCATATCGCCTCCTTTTTAATGTTTTTGTCTGTGCTAATATCCCTGATTCTGTTTTATTGGGGGAATGTACAGAGGCTTCGACAAGCTCAGCGCACTATGCCGGAACAGCCTGGGAACTCTAAGCTCAGCAAGTCAAAACGTAACATGCGAGTACTGGTGGTGGTTTTCTGCGTGTGTTTTGTGCCCTACCATATGGTGAGACTGCCGTACATGTTCGTCAATCCCCGGCTGCATGACTGTACTTCAGCTCAGGCGTTCTACATCCTAAAGGAGCTGACCGTCCTGCTTGCAGTACTAAATGCCTCATTGGATCCACTTATTTACTTTGTCTTTTGCAAGACTTTCAAGGCCCACCTTCAAAGATTTCGACAAAATAACTAGTAAGTTGAATTAAAGGTGAAATGTGTGATTTCTGCACCACTAGTGGCATGAAACGGAACTGCAAAAATTTAGGCAAGATATGGGTGTGAGGTATGAGCCCTACATGGGATTGTGCATGGGTTTCATGTCAACCCTATCTGAATTAGCCCATACTGTGCCTAATTCATAGACATTCATTCATAGACAACCCATAGACAAACCCATGAAGGGCCCATACCTCACGCCCATATTGTGCCTACATTGGCCCCACCATAAAATGTTGGCTGGGAACAGGTTCACTTGAAATCACTATTTGATTTCATTGCTTTAATGACAGCAGCACTTGAGCTGCATGAACTTCACAAGTTTGTGTAAAACCTAATGATCATGTTCTCCTGCATCATTTGAGAATTTTTTTGCATCTTGAGCTTTAATGGAAGCAAGAACATCTGACCATCTGTACAAAGGAGTTTATCTAGATCAGTTTACTTATTTAATTAGTAACATAGCAGTAGTGCAGAAATATTTCTTATCATTTTAAGACTTTTCTTTATTTTATTTTGCTTGCCAAAAACATCAATATAGAACCTAAAATATGTTGAATATACAAATATAACATGATGTCCACCTTAGGAAAATGGGCATCTCCATGCTTTATTCAAACATTATTAAAAATTTGTTAAAGATTTTGTAAGCATATTGCGTTAGGGTTATATATATGTATATATATATATATATATATATATATATATATATATATATATAAATTTTTTTACCCCCTCATATATTGATGGTTTAATCAAGCATGTAGGGTCATTAAGAACAAATTAAAACAAATTCTGCCACCACTGTAAACACATTATACAATAGTAATAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345949 lncRNA downstream 38311 1231114 ~ 1231434 (-) True G304458
TU345904 lncRNA downstream 44435 1225074 ~ 1225310 (-) True G304423
TU345924 lncRNA downstream 47675 1221866 ~ 1222070 (-) True G304436
TU345921 lncRNA downstream 51601 1217854 ~ 1218144 (-) True G304433
TU345920 lncRNA downstream 52498 1216997 ~ 1217247 (-) True G304432
TU345968 lncRNA upstream 13095 1286228 ~ 1286555 (-) True G304477
TU345972 lncRNA upstream 16306 1289439 ~ 1289777 (-) True G304481
TU345975 lncRNA upstream 72160 1345293 ~ 1345613 (-) True G304484
TU345946 lncRNA upstream 73196 1346329 ~ 1346888 (-) True G304455
TU345978 lncRNA upstream 150456 1423589 ~ 1423791 (-) True G304487
CI01000092_01266540_01267541.mRNA mRNA downstream 1266 1266358 ~ 1268479 (-) True CI01000092_01266540_01267541
CI01000092_01201434_01205306.mRNA mRNA downstream 63213 1199874 ~ 1206532 (-) True CI01000092_01201434_01205306
CI01000092_01186569_01191243.mRNA mRNA downstream 78212 1186121 ~ 1191533 (-) True CI01000092_01186569_01191243
CI01000092_01122961_01135673.mRNA mRNA downstream 133742 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
CI01000092_01110360_01113717.mRNA mRNA downstream 154517 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01307631_01315805.mRNA mRNA upstream 34182 1307315 ~ 1315805 (-) True CI01000092_01307631_01315805
CI01000092_01317932_01336911.mRNA mRNA upstream 44641 1317774 ~ 1338546 (-) True CI01000092_01317932_01336911
CI01000092_01352766_01386659.mRNA mRNA upstream 79612 1352745 ~ 1386659 (-) True CI01000092_01352766_01386659
CI01000092_01451469_01485752.mRNA mRNA upstream 178336 1451469 ~ 1485752 (-) True CI01000092_01451469_01485752
CI01000092_01488880_01522758.mRNA mRNA upstream 215747 1488880 ~ 1522758 (-) True CI01000092_01488880_01522758
TU345950 other downstream 37453 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 172827 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 210825 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 210881 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 1451461 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2404741 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3223281 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 3531262 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 3880535 5153668 ~ 5154133 (-) True G306902

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017685 True 1830 mRNA 0.41 2 NC_007126.7 4049222 ~ 4053149 (-)