RNA id: TU345946


Basic Information

Item Value
RNA id TU345946
length 560
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G304455
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 1346329 ~ 1346888 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAACGGACCCAACAACGAGGACTTCTACAGCAAAATGGGAATCTTCCTCGTGCCAATCCCTCCGGCTGTCCGCAGACCAAAGGTCTCAGCGGTGGACCGTCTGTGGACCCTCAGGCAGGACGGTCGCCCGCTGGAGAGGTACATGGAGGAATTTTCTGAGCTTTCTTGCCTGGTGAACTGACCTGATGCTCCACTTAACGCCTGTTTTCTGAAGGGCCTGAACGAGGATACGATTCGTTATAGTGAACCTGCCTGTTTCTTTTCCCTAGTCGAGTCTATTAATCTGATTTTCTTCTTAAATGGTTCTGATTTCGAAATTGAAGAGGTTCAGGAGAAAACGTATCATCCTCGTCGAGTCCCCTCAGAAAAACACGCGGCCTGGTCAGTTCACCAACTGCCAGTTTCCTCCGCGTACCCCTCCAGTGGGCATTCCCCTGTGGTCCTGCCAGATCCAAAGCCCAGACCGCCCAAAAGGAGAGCCACTGCGAGGCCCAGACGGCCTAAGAAAATGGCCGCTGCCTCACCAGAGCCTCCAGTGAAGCCTGCCGCAAGGCCTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345975 lncRNA downstream 716 1345293 ~ 1345613 (-) True G304484
TU345972 lncRNA downstream 56552 1289439 ~ 1289777 (-) True G304481
TU345968 lncRNA downstream 59774 1286228 ~ 1286555 (-) True G304477
TU345960 lncRNA downstream 73969 1272143 ~ 1272360 (-) True G304469
TU345959 lncRNA downstream 74379 1271623 ~ 1271950 (-) True G304468
TU345978 lncRNA upstream 76701 1423589 ~ 1423791 (-) True G304487
TU345948 lncRNA upstream 125120 1472008 ~ 1481912 (-) True G304457
TU346007 lncRNA upstream 201350 1548238 ~ 1548482 (-) True G304512
TU346013 lncRNA upstream 208510 1555398 ~ 1555698 (-) True G304518
TU346015 lncRNA upstream 264192 1611080 ~ 1611355 (-) True G304520
CI01000092_01317932_01336911.mRNA mRNA downstream 7783 1317774 ~ 1338546 (-) True CI01000092_01317932_01336911
CI01000092_01307631_01315805.mRNA mRNA downstream 30524 1307315 ~ 1315805 (-) True CI01000092_01307631_01315805
CI01000092_01270604_01273133.mRNA mRNA downstream 73196 1269745 ~ 1273133 (-) True CI01000092_01270604_01273133
CI01000092_01266540_01267541.mRNA mRNA downstream 77850 1266358 ~ 1268479 (-) True CI01000092_01266540_01267541
CI01000092_01201434_01205306.mRNA mRNA downstream 139797 1199874 ~ 1206532 (-) True CI01000092_01201434_01205306
CI01000092_01352766_01386659.mRNA mRNA upstream 5857 1352745 ~ 1386659 (-) True CI01000092_01352766_01386659
CI01000092_01451469_01485752.mRNA mRNA upstream 104581 1451469 ~ 1485752 (-) True CI01000092_01451469_01485752
CI01000092_01488880_01522758.mRNA mRNA upstream 141992 1488880 ~ 1522758 (-) True CI01000092_01488880_01522758
CI01000092_01562366_01575276.mRNA mRNA upstream 215160 1562048 ~ 1575276 (-) True CI01000092_01562366_01575276
CI01000092_01588502_01599337.mRNA mRNA upstream 241585 1588473 ~ 1599337 (-) True CI01000092_01588502_01599337
TU345950 other downstream 114037 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 249411 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 287409 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 287465 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 1377706 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 2330986 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 3149526 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 3457507 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 3806780 5153668 ~ 5154133 (-) True G306902

Expression Profile