RNA id: CI01000092_03733899_03743505.mRNA


Basic Information

Item Value
RNA id CI01000092_03733899_03743505.mRNA
length 2521
RNA type mRNA
GC content 0.41
exon number 10
gene id CI01000092_03733899_03743505
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3732957 ~ 3743557 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTGTAAAGAAAAAAAAAACTGAACTGAACGTAACATTTAAGAGAAGAGAAATGGAACTCTCTAGCTCATTGGTGTTGGTTTTAGTCCTGGCTGTGCTGATGTTGGTCAAATGGAAGAGGAAGGCGAGTGGACTTTCTTTGCCCCCAGGGCCACTGGCACTGCCACTGGTTGGAAATTTGCCAATAATGGACAAGAGTGCACCCTTTAAAAGCTTTATGAAGGGCAGAGTGTATGGCCATTGCAATGGCGTCATCAGTGGATCTTTTAGTCCATGGAGTAAAACCTATGGGCCTGTGATGACGGTGCACATCGGACTCCAAAGAACGGTGGTTCTGGTCGGTTATGATACAGTGAAAGAGGCTCTAGTGGACCAGGCAGACGACTTCAAAGGCAGAGCACCCGTTCCCTTACTGAACAGAGTTCTGAGAGGCTACGGTTTGGCCATCAGTAATGGAGATCGTTGGCAACAGCTCAGGCGGTTCACTCTCACCACATTGAGGGATTTTGGAATGGGACGCAAACAAATGGAACAGTGGATTCAAGAAGAGAGCAGGCATTTGCTGAACAGTTTTGAAGAAACCAAATCAACACCAGTCGACCCAACCTTCTTCATGAGCCGGGCTGTGTCCAATGTGATCTGTTCTCTGGTGTTTGGGCAGCGCTTTGATTATGAAGACAAAAACTTCCTGCACTTGCTCCAGATCATCTCCAGACTTGTGCGCTTTGGCAGCAGTCCTTGGGGTCAGATGTACAACATCTTCCCTAAACTAATGGAGTTTTTGTCTGGTAGACATCATGCCATGTTTAGAGAGGTAGAGGACATCAAAGCCTTCATTATGACAAAAATCAAGGAGCATGAGCAGAATGTGGACTTCAGTGACCCAAAGGACTTTATTGACTGCTTCCTTATAAGACTCATAGAGGAGAAACACAATCCTGACACAGAATTCCACAAGGATAACATGTTGGGGACTGTTCTAAATCTGTTTGTAGCTGGTACAGAGACCACCAGCACAACTATCAGATATGCCCTGATGCTGTTGATCAAGTACCCCCACATACAGGAGCAAATGCAGAGGGAGATTGATCGAGTTATTGGACAGAACAGAATCCCTAATATGGATGACAGGAAGTCCCTCCCATTCACTGATGCTGTGATTCATGAAGTACAACGCTATATGGACATCGTCCCACTAAATTTTCCCCACTATGCCACGCATGACATCTCATTCAGAGGCTATGTAATACCAAAGGACACTGTAATTCTTCCCATGCTGCACTCTGTCCTAAGGGATGAGGGACAGTGGGAAACTCCTTGGACATTTAACCCAGAGCACTTCCTGGATGCCAATGGCAACTTTAAAAAGAATCCAGCCTTTTTTGCTTTTTCTGCAGGTAAACGCTCTTGTGTGGGCGAGTCTCTGGCTCGTATGGAGCTCTTTCTATTCATCGTGTCTCTGCTTCAGAAGTTCAGCTTCAGTAGTCCAAAGGGTCCAGATGGCATAGACCCCAGTCCTGAACTCAGCAGCTTTGGCAACATGCCTCGATTCTATGATCTTATTGCATCCCCCCGCTGAGCAACATGGATACTGCTACTTGTCTCATTTTACAAATTGAGAACAAATGGATCAAAGCTCCTTTAGGATATATATTTTTATGTAAGATTTTTTAATGAGCCTATTTTGTCAAAATTACCACCATAAAACTGAAAAGCAGTCTTGCATCAATGCTATAGTGCAGAGGTTCTCAAATTTCCAAGTACAACCTTTGATCAAATCACCAAGTCTCTTTGCGTGCAAGTTTAAGAGCAATTTTTTGCTGCATTGAAAATCATTAGGCAATCACCCAAGCAAAATTTTGTGCTGCCCTGCATTTCCAGAGAAAGTAGATTTTAATTACTTCTGTGTATGAAATGTGATGTACATTGAAATGATTTAAATGTTTTACTTTTTAAATTGATACATAAAACTAAATAATAATAATAAAAAAAACTTAACCAAATAAATAAAACTAAGGTTTGTAAGCGTCGTTTGTCCAAACTCACACTTGTCATTCAATGACTCTGGTTCTTTAAATATTCTTTGATGGAAAATCTACAACCTTGACCACCAAGCTGTTGGAAAATGATTGTTGCACAAACTTTGGGTCAAACCAATCGGCTTGAACTCATGAGTCATTATTCTGAATCTTTGTAACAAAAAATAACTTCCACGCTCACTCAAATAATTCAGAGCCCACTTATAGTCGGTAGAATATCTGTTGGGGAGCATCAAAATAAAGTTTTAGCAGTTAATAAGCAGACAGTCTACTAATACTCTAATGAGAGTTAGCTGACATGTAGTGGCAATATTACTTTCAACAGAATCATTCAGAATGTCTAAAGGGGAACATCAAAATAAAGTCTAATTGAAGACTAAAAGTGACACTGTGTCCAAATTCATGAACTGTGAGAGTATGCACTGCATTTGATCAAGAACTTAGCTCAACACAATCTTTATTTATAAATTTTTTAGAATAAA

Function

GO:

id name namespace
GO:0004497 monooxygenase activity molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347777 lncRNA downstream 7280 3725027 ~ 3725677 (-) True G306083
TU347697 lncRNA downstream 50342 3682263 ~ 3682615 (-) True CI01000092_03682820_03688497
TU347687 lncRNA downstream 55189 3676767 ~ 3677768 (-) True G306010
TU347694 lncRNA downstream 58523 3671445 ~ 3674434 (-) True G306017
TU347485 lncRNA downstream 134228 3597328 ~ 3598729 (-) True G305810
TU347829 lncRNA upstream 271228 4014785 ~ 4015061 (-) True G306120
TU347830 lncRNA upstream 282207 4025764 ~ 4026076 (-) True G306121
TU347832 lncRNA upstream 283817 4027374 ~ 4027599 (-) True G306123
TU347848 lncRNA upstream 362408 4105965 ~ 4106251 (-) True G306139
TU347852 lncRNA upstream 368447 4112004 ~ 4116902 (-) True G306142
CI01000092_03702024_03712418.mRNA mRNA downstream 20539 3700946 ~ 3712418 (-) True CI01000092_03702024_03712418
CI01000092_03682820_03688497.mRNA mRNA downstream 44426 3682414 ~ 3688531 (-) False CI01000092_03682820_03688497
CI01000092_03652598_03660979.mRNA mRNA downstream 71853 3652598 ~ 3661104 (-) True CI01000092_03652598_03660979
CI01000092_03630767_03645397.mRNA mRNA downstream 86801 3630626 ~ 3646156 (-) True CI01000092_03630767_03645397
CI01000092_03614992_03615400.mRNA mRNA downstream 115974 3614437 ~ 3616983 (-) True CI01000092_03614992_03615400
CI01000092_03750015_03753913.mRNA mRNA upstream 5683 3749240 ~ 3753976 (-) True CI01000092_03750015_03753913
CI01000092_03762168_03785262.mRNA mRNA upstream 17263 3760820 ~ 3785407 (-) True CI01000092_03762168_03785262
CI01000092_03841542_03853786.mRNA mRNA upstream 96780 3840337 ~ 3853992 (-) True CI01000092_03841542_03853786
CI01000092_03855138_03858761.mRNA mRNA upstream 111581 3855138 ~ 3858761 (-) True CI01000092_03855138_03858761
CI01000092_03860647_03862519.mRNA mRNA upstream 116875 3860432 ~ 3863147 (-) True CI01000092_03860647_03862519
TU347691 other downstream 53469 3677874 ~ 3679488 (-) True G306014
TU347441 other downstream 1008013 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 2500665 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 2636039 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345842 other downstream 2674093 1058367 ~ 1058864 (-) True G304369
TU348466 other upstream 752857 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 1060838 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 1410111 5153668 ~ 5154133 (-) True G306902

Expression Profile