RNA id: TU347848


Basic Information

Item Value
RNA id TU347848
length 287
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G306139
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4105965 ~ 4106251 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTCATTGGCAAAATTAACAAAAGCAGACAATATGTCTAAAATATAACACAATATTAACTTCTGATTTATTAAACTGTTGTATAAAATCAATATCACATTTGCACTCATACTATTCGGGACAAAAACAGCACTCGTGTGATATTGCGCTCGTTAGTGGTATGATATTGCTTAACTATATCATATGACATAAATATGAGACAGCAACTCATACAGGGGCATTTCAGATATCTTGAATTTTAGGATCATTCTAACTGCATTCTATAGGCTCCTTCACGCAGTGAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347832 lncRNA downstream 78366 4027374 ~ 4027599 (-) True G306123
TU347830 lncRNA downstream 79889 4025764 ~ 4026076 (-) True G306121
TU347829 lncRNA downstream 90904 4014785 ~ 4015061 (-) True G306120
TU347795 lncRNA downstream 362717 3742480 ~ 3743248 (-) True G306089
TU347777 lncRNA downstream 380288 3725027 ~ 3725677 (-) True G306083
TU347852 lncRNA upstream 5753 4112004 ~ 4116902 (-) True G306142
TU347865 lncRNA upstream 32122 4138373 ~ 4138684 (-) True G306155
TU347873 lncRNA upstream 43810 4150061 ~ 4150286 (-) True G306163
TU347884 lncRNA upstream 54892 4161143 ~ 4161414 (-) True G306174
TU348348 lncRNA upstream 112298 4218549 ~ 4219735 (-) False G306577
CI01000092_04029480_04033662.mRNA mRNA downstream 72303 4029403 ~ 4033662 (-) True CI01000092_04029480_04033662
CI01000092_03957253_03983692.mRNA mRNA downstream 122273 3956721 ~ 3983692 (-) True CI01000092_03957253_03983692
CI01000092_03940545_03951203.mRNA mRNA downstream 154643 3940328 ~ 3951322 (-) True CI01000092_03940545_03951203
CI01000092_03890410_03901625.mRNA mRNA downstream 204340 3890410 ~ 3901625 (-) True CI01000092_03890410_03901625
CI01000092_03883093_03883504.mRNA mRNA downstream 222258 3882967 ~ 3883707 (-) True CI01000092_03883093_03883504
CI01000092_04294820_04300366.mRNA mRNA upstream 188230 4294481 ~ 4300366 (-) True CI01000092_04294820_04300366
CI01000092_04330061_04333852.mRNA mRNA upstream 223810 4330061 ~ 4334004 (-) True CI01000092_04330061_04333852
CI01000092_04349339_04350441.mRNA mRNA upstream 243088 4349339 ~ 4350441 (-) True CI01000092_04349339_04350441
CI01000092_04413965_04426684.mRNA mRNA upstream 307714 4413965 ~ 4426684 (-) False CI01000092_04413965_04426684
CI01000092_04484800_04489910.mRNA mRNA upstream 377982 4484233 ~ 4491148 (-) True CI01000092_04484800_04489910
TU347691 other downstream 426477 3677874 ~ 3679488 (-) True G306014
TU347441 other downstream 1381021 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 2873673 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 3009047 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345842 other downstream 3047101 1058367 ~ 1058864 (-) True G304369
TU348466 other upstream 390163 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 698144 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 1047417 5153668 ~ 5154133 (-) True G306902

Expression Profile