RNA id: CI01000092_03890410_03901625.mRNA



Basic Information


Item Value
RNA id CI01000092_03890410_03901625.mRNA
length 1722
RNA type mRNA
GC content 0.50
exon number 12
gene id CI01000092_03890410_03901625
representative True

Chromosome Information


Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3890410 ~ 3901625 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAGGAGCTGGCTCCGACAAGGCAAGAAGTTTAGATTGTTTCATCCTTCCAGAGGCGTTTCAGGAAGCCAGCTTTTTGGCACTATACTGTCCAGTCTGTTTCTGGAGGCCGTGCTTTCAGTATTGAGCAGTGATGGAAATAGGCCAGTGAAGCCCATGATGGCAGAGTGTACAGTAGCCCCAGTAGCAATGGAGGACAGTGACCATGAGGTCGACTCGGCATCAGATGAGCAGGACTCTATGCCAGCGTCACCTGAGCCCAGGATGCATGAAGTGGAAAAGCACTTCCCTAAGGAAGACTCGGAGGACTCGGAGCTGGAGCACATCATGGGACATCACCCGCCCAGAGAGGGCCACCCGTTCGCCCACCCCGGGCCCCATAAGGCCGATAGTGAGGGTGAGGCTCACAGCAGGCCTCACACCCCAGGAACACCCACCTTCCTGAGGCCCGCAGCGGCACCCAGGGGCCCCGGAGAGTTAGAGCACGAGTCCAGACACGGGGCTCAGCGGGGCCATGTGGACTTTAGCCTGTCGTCTCCCATCAGCCCATCCAGGCCTAAAAGTCCCTGGGGTCGCTTTGACCCCTATGAATCTGCTGAGGACCAGGACAAGGAATATGTCGGATTTGCTACTTTGCCAAATCAGGTTCACCGCAAATCTGTGAAGAAGGGCTTTGACTTTACTTTAATGGTAGCAGGAGAGTCAGGTTTAGGAAAGTCCACTCTGGTCAACAGTCTGTTCCTTACAGATCTCTACAAAGACCGAAAACTGCTCAATGCTGAAGAGAGGATCACTCAGACGGTGGAGATCACCAAACACACAGTGGACATTGAGGAGAAGGGCGTCAAACTGAAGCTCACTATCGTGGACACACCAGGATTCGGGGATGCTGTCAATAACACTGAATGCTGGAAGTCGGTGGCAGACTACATAGACCAACAGTTTGAGCAGTACTTCAGAGATGAGAGTGGACTGAACCGCAAGAACATTCAGGATAACCGAGTGCACTGCTGTCTCTACTTCATTTCACCCTTCGGTCACGGTTTGAGGCCTCTGGACGTGGAGTTTATGAAGGCTCTTCATGAGAAGGTCAACATTGTTCCTGTACTAGCTAAAGCTGACACACTCACACCAATGGAGGTCAAGAAAAAGAAAATCAAGGCAAGTGCTCGAGCTGTCAAAAGCTGTGTTGTTTGTATTCGAGAGGAGATCGAACAATACGGAATAAAGATCTACCAGTTTCCAGACTGTGATTCAGATGAGGATGAGGACTTCAAACAGCAAGACCAAGAGCTCAAGGACAGCATTCCCTTTGCTGTGATTGGCAGTAATACAGTAGTGGAAGCAAAAGGCAAGAGGGTTCGAGGACGTCTGTACCCTTGGGGAATTGTAGAAGTGGAGAACCCAGCACACTGTGACTTCGTGAAGTTGAGGAACATGTTGGTACGAACACACATGCAAGATCTGAAGGATGTGACCCGGGAAACCCACTACGAGAACTACAGAGCCCAGTGCATCCAGAGTATGACCCGCATGGTGGTGAAAGAACGCAATCGCAAGTACGCAGTCACGATTCAGGCAGCAGAAGCTGTGTTTTCACTCTTCATCAGCTTTTGTTTTGAACAACAGTGGCCCCAAAAAGTATTTGGAAACTTAAGTCACATAAGATATTTGCATTTCGAAAAGAAGTTTTATTTATATAGTGCCTTTCCACGGCTCAAG

Function


GO: NA

KEGG:

id description
K16943 SEPT4; septin 4

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU347795 lncRNA downstream 147162 3742480 ~ 3743248 (-) True G306089
TU347777 lncRNA downstream 164733 3725027 ~ 3725677 (-) True G306083
TU347697 lncRNA downstream 207795 3682263 ~ 3682615 (-) True CI01000092_03682820_03688497
TU347687 lncRNA downstream 212642 3676767 ~ 3677768 (-) True G306010
TU347694 lncRNA downstream 215976 3671445 ~ 3674434 (-) True G306017
TU347829 lncRNA upstream 113160 4014785 ~ 4015061 (-) True G306120
TU347830 lncRNA upstream 124139 4025764 ~ 4026076 (-) True G306121
TU347832 lncRNA upstream 125749 4027374 ~ 4027599 (-) True G306123
TU347848 lncRNA upstream 204340 4105965 ~ 4106251 (-) True G306139
TU347852 lncRNA upstream 210379 4112004 ~ 4116902 (-) True G306142
CI01000092_03883093_03883504.mRNA mRNA downstream 6703 3882967 ~ 3883707 (-) True CI01000092_03883093_03883504
CI01000092_03860647_03862519.mRNA mRNA downstream 27263 3860432 ~ 3863147 (-) True CI01000092_03860647_03862519
CI01000092_03855138_03858761.mRNA mRNA downstream 31649 3855138 ~ 3858761 (-) True CI01000092_03855138_03858761
CI01000092_03841542_03853786.mRNA mRNA downstream 36418 3840337 ~ 3853992 (-) True CI01000092_03841542_03853786
CI01000092_03762168_03785262.mRNA mRNA downstream 105003 3760820 ~ 3785407 (-) True CI01000092_03762168_03785262
CI01000092_03940545_03951203.mRNA mRNA upstream 38703 3940328 ~ 3951322 (-) True CI01000092_03940545_03951203
CI01000092_03957253_03983692.mRNA mRNA upstream 55096 3956721 ~ 3983692 (-) True CI01000092_03957253_03983692
CI01000092_04029480_04033662.mRNA mRNA upstream 127778 4029403 ~ 4033662 (-) True CI01000092_04029480_04033662
CI01000092_04294820_04300366.mRNA mRNA upstream 392856 4294481 ~ 4300366 (-) True CI01000092_04294820_04300366
CI01000092_04330061_04333852.mRNA mRNA upstream 428436 4330061 ~ 4334004 (-) True CI01000092_04330061_04333852
TU347691 other downstream 210922 3677874 ~ 3679488 (-) True G306014
TU347441 other downstream 1165466 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 2658118 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 2793492 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345842 other downstream 2831546 1058367 ~ 1058864 (-) True G304369
TU348466 other upstream 594789 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 902770 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 1252043 5153668 ~ 5154133 (-) True G306902

Expression Profile