RNA id: TU347873


Basic Information

Item Value
RNA id TU347873
length 226
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G306163
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4150061 ~ 4150286 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAACAACCAATATTACAAAAATAAAACTAAAATTACGAATATATTTCAAAATGTGACATTAAAAAGTGTAAAAGTCACTCATTTTTGTAAAGTAACACTGTCCAACAGCGACACCTGCAGGTAAAGTTGCAGCGAAGGCTTGCCTCCCCTGAACCCATTGACTTATAACAGACCCCCTAAAAAGTGCGGTGGGTTTAGTGGGGGGTAATTGAGAATGAATGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347865 lncRNA downstream 11377 4138373 ~ 4138684 (-) True G306155
TU347852 lncRNA downstream 33159 4112004 ~ 4116902 (-) True G306142
TU347848 lncRNA downstream 43810 4105965 ~ 4106251 (-) True G306139
TU347832 lncRNA downstream 122462 4027374 ~ 4027599 (-) True G306123
TU347830 lncRNA downstream 123985 4025764 ~ 4026076 (-) True G306121
TU347884 lncRNA upstream 10857 4161143 ~ 4161414 (-) True G306174
TU348348 lncRNA upstream 68263 4218549 ~ 4219735 (-) False G306577
TU348350 lncRNA upstream 68263 4218549 ~ 4221212 (-) True G306577
TU348354 lncRNA upstream 76569 4226855 ~ 4227433 (-) True G306581
TU348358 lncRNA upstream 81724 4232010 ~ 4232246 (-) True G306585
CI01000092_04029480_04033662.mRNA mRNA downstream 116399 4029403 ~ 4033662 (-) True CI01000092_04029480_04033662
CI01000092_03957253_03983692.mRNA mRNA downstream 166369 3956721 ~ 3983692 (-) True CI01000092_03957253_03983692
CI01000092_03940545_03951203.mRNA mRNA downstream 198739 3940328 ~ 3951322 (-) True CI01000092_03940545_03951203
CI01000092_03890410_03901625.mRNA mRNA downstream 248436 3890410 ~ 3901625 (-) True CI01000092_03890410_03901625
CI01000092_03883093_03883504.mRNA mRNA downstream 266354 3882967 ~ 3883707 (-) True CI01000092_03883093_03883504
CI01000092_04294820_04300366.mRNA mRNA upstream 144195 4294481 ~ 4300366 (-) True CI01000092_04294820_04300366
CI01000092_04330061_04333852.mRNA mRNA upstream 179775 4330061 ~ 4334004 (-) True CI01000092_04330061_04333852
CI01000092_04349339_04350441.mRNA mRNA upstream 199053 4349339 ~ 4350441 (-) True CI01000092_04349339_04350441
CI01000092_04413965_04426684.mRNA mRNA upstream 263679 4413965 ~ 4426684 (-) False CI01000092_04413965_04426684
CI01000092_04484800_04489910.mRNA mRNA upstream 333947 4484233 ~ 4491148 (-) True CI01000092_04484800_04489910
TU347691 other downstream 470573 3677874 ~ 3679488 (-) True G306014
TU347441 other downstream 1425117 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 2917769 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 3053143 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345842 other downstream 3091197 1058367 ~ 1058864 (-) True G304369
TU348466 other upstream 346128 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 654109 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 1003382 5153668 ~ 5154133 (-) True G306902

Expression Profile