RNA id: CI01000092_04822399_04827194.mRNA


Basic Information

Item Value
RNA id CI01000092_04822399_04827194.mRNA
length 2702
RNA type mRNA
GC content 0.42
exon number 4
gene id CI01000092_04822399_04827194
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 4821906 ~ 4827194 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGTGACTCTCAACTCACTGAAGTCCTCAAATCATTTAGATCAAATTTGTTGGAACAGTTTAAGTATCTGTATGAGAGAACAACACCTCACCAAAGATCTCATTCACTCCTGAATGAGATTTACACAGAGCTCTACATCACAGAGAGTGAAAGTGGAGAGATCAGTAATGAGCATGAGGTGAGACAGATTGAGACTCAATCCAGGAGAGCAGCAACAGAACAAACACCAATCAAATGCAGTGACATCTTTAAAACTTTACCTGGACAAGACAAACCCATCAGAACTGTGCTGACAAAGGGAGTCGCTGGCATTGGGAAAACAGTCTCTGTGCAGAAGTTCATTGTGGACTGGGCTGAAGGGAAAGAGAATCAGGACATCCAGCTCATATTTCCACTTCCTTTCAGAGGGCTCAACTTGATGAAGGACGAAACAGTCAGTCTTTCAGATCTTCTTCATTTCTTTTTCCCCATAATAAACAAAATGAAACCATTCAGTGGTGAATATAAAATTTTCTTCATCTTTGATGGTCTGGATGAGTGTCGTCTGTCTCTGGATATTCAGAGCAATGTGAGGTTGTGTGATGTGACTGAATCAGCCTCAGTGGACATGCTACTGATGAACCTCATTGCGGGGAATCTGCTTCCCTCTGCTCTCATCTGGATCACCTCCAGACCAGCAGCAGCTGATCTCATCCCCTCTGAGTGTGTTCATCGAGTGACAGAGGTACGAGGCTTCAGTGACCCACAGAAGGATGAATACTTCAGGAAGAGAATCAGTGATCAGAGTCTGGCTGAGAGGATCATCTCACACCTGAAGTCATCAAGGAGCCTCCACATCATGTGCCACATCCCAGTGTTCTGCTGGATCTCAGCCACTGTTCTAGAGAAGATGTTGAGTGAAGCAGAGAGTGGAGAGATTCCCAAGACTCTCACAGGAATGTACACACACTTCCTTATCCTTCAGACCAACATCAGACATCATGAGAAAGACTATGAGAAGAACGTGACAGATGAAGACATGATCCTCAAACTGGGGAAAGTGGCTTTTCAGCAGCTTGTGAAAGGAAACCTGATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGACAGAAGCATTAGTGTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGGGAAAGTCTTCAGCTTCGTTCATCTAAGCATTCAGGAACATCTAGCGGCTCTATATAAGCACCTCACTTTTACAGAAAGCAGCATAAATGTGTTTGACCAAATCACCAAACAAAGACCAAAAAAAGCTTTGGATTGGTTCCAGAATGCTGCAGAAAAATATGTTTCATTGTCTGATTTGCATCAGAGAGCTGTGGATGGGGCTCTACAGAGTAAAAATGGACATCTGGATCTTTTTCTGCGTTTCCTTCTGGGTCTGTCAGTAAAGGCTAATCAGAATCTCCTACAAAGTCTAACTACACAGACAGTAAGCAGCTCTGACAGCAATGAGAAAACAGTTGAGTACATCAAGAAAAAGATCAGGTCCATCAAATCTCCAGAGAAATCCATCAATCTGTTCCACTGTCTGAATGAACTGGGTGACTATTCATTAGTGGAGGAAATGAAATATTATCTGAAATATGGAACAGTAAGGGAAACCAAACTCTCTTCATCTCAGTGCTTGAGTGATTGTGGAATCACAGCTGAAAGTTGTGCTGCTCTGGCTTCAACACTGAGTTCAAACCCCTCACACCTGAGAGAACTGGATCTATCTGACAATAATCTAGGAGACTCAGGAGTGAAGCATCTCTCTGATGTACTAAAGAATCCTCACTGTAAACTGGAGATACTGAGGATGAGGAACTGTGGTGTAACAGAGAAAGGTTGTGCTGCTCTGGCTTCAGCTCTGAGATCAAATCCCTCACACCTAAGAGATCTGGATCTGACTGATAATAACCATATAAGTGGTTCTGGAGTGAAGTGGCTCTCTGATGTAGTACAGAGTCCTAGCTGTAAACTGGAGAAACTATGGTTGATTAATTGTGGTGTCACTGATGAAAGTTGCTCTGCTTTGGCTTTAGCTCTAAAATCAACCCCCTCACACTTGAGAGATCTGAATCTGTCTAAGAATAAAATAGGAAATTTAGGGGTGAAGCTACTCTCCAATGGACTGGAGGATACTCACTGTAAACTGGAGAAATTGTGGTAAGATCATCTCTATGCTGTTAACACACCTTTGTCTCAGTAAGACATTTTCTTTTGCATTATTGTAGTTTTGGTTACATGAGTTTCCTCTAGTTATTTTAGCCAGTAAAACTCAATGAAATCCGTGATGAAGAAAATGACATATGGGTTCAATAATGATATCTTCAACTTTACAATTCTTCCACTTACTAGAGTCATGATTAATCCTTACAAGGAACCTAATAGAAATGATAATGGAACTTAATATTTAGAATCATCTGGCGGGTTTGATGAGCACATCAGTTAAACAGGAGTCCTCTCAATGCAGATCAGCAGGTTTATAATTACAGGGTAAACCTAGTATTTCAAGGTTAAAATCAACCCAAAAGAATGTTAACTTTCAGAGCAAAATCTTTTAGGTCAAAGTGCCTCCAACTTAAAACATCTTAAGAATCTTAAGAATGGGGGAGGGGGGCACAGAAAACATAGTTGCACCCCTGCCTATTCTACAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU348577 lncRNA downstream 55804 4764299 ~ 4766102 (-) True G306780
TU348548 lncRNA downstream 77272 4743846 ~ 4744634 (-) True G306752
TU348581 lncRNA downstream 100084 4721585 ~ 4721822 (-) True G306782
TU348573 lncRNA downstream 109768 4711839 ~ 4712138 (-) True G306777
TU348572 lncRNA downstream 111322 4710365 ~ 4710584 (-) True G306776
TU348689 lncRNA upstream 133364 4960558 ~ 4960838 (-) True G306878
TU348720 lncRNA upstream 330943 5158137 ~ 5158842 (-) True G306905
CI01000092_04730022_04742422.mRNA mRNA downstream 79017 4729890 ~ 4742889 (-) True CI01000092_04730022_04742422
CI01000092_04692404_04694159.mRNA mRNA downstream 126430 4691840 ~ 4695476 (-) True CI01000092_04692404_04694159
CI01000092_04612376_04613032.mRNA mRNA downstream 208715 4612173 ~ 4613191 (-) True CI01000092_04612376_04613032
CI01000092_04545522_04550438.mRNA mRNA downstream 271167 4545236 ~ 4550739 (-) True CI01000092_04545522_04550438
CI01000092_04484800_04489910.mRNA mRNA downstream 330758 4484233 ~ 4491148 (-) True CI01000092_04484800_04489910
CI01000092_04838658_04840626.mRNA mRNA upstream 11014 4838208 ~ 4840626 (-) True CI01000092_04838658_04840626
CI01000092_04873079_04899153.mRNA mRNA upstream 45657 4872851 ~ 4899153 (-) True CI01000092_04873079_04899153
CI01000092_04997617_05000398.mRNA mRNA upstream 170138 4997332 ~ 5000672 (-) True CI01000092_04997617_05000398
CI01000092_05003845_05017069.mRNA mRNA upstream 176610 5003804 ~ 5017408 (-) True CI01000092_05003845_05017069
CI01000092_05043766_05046720.mRNA mRNA upstream 216292 5043486 ~ 5046720 (-) True CI01000092_05043766_05046720
TU348466 other downstream 315953 4496414 ~ 4505953 (-) True G306679
TU347691 other downstream 1142418 3677874 ~ 3679488 (-) True G306014
TU347441 other downstream 2096962 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 3589614 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 3724988 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU348717 other upstream 326474 5153668 ~ 5154133 (-) True G306902

Expression Profile