RNA id: TU345717


Basic Information

Item Value
RNA id TU345717
length 358
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G304260
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 886198 ~ 886555 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGGAATAAATTACTTACCGCAGCTGGATCAATTGCATTCTTCTTCTTCTGAGGTAAATTCAAGGTTTATTCCTCACAATGCGTCTACCAAACTCAAAGAAAAGCAGAGGAATGATGAAGCTTGATGTTTGTTTATCAAGGTGATGGGGGCATTTACAGGTTTGCGTACCTCACACTTGGAATGCTGCGCAACGTGTGGGTGTGGTCACATTAAAGATAAATCAAGCGTAGCGTCAGTTCTGGCAGGTCACGTCAGTCAAGTTTGCATCAACTGACTCCCAGGTGACTCACGTCTACCTATAGGATACGACGCCTATCACAGCATCCATATATAATGCTGTGTTCCAGGCAGGTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345672 lncRNA downstream 96177 789806 ~ 790021 (-) True G304226
TU345664 lncRNA downstream 108251 777712 ~ 777947 (-) True G304218
TU345517 lncRNA downstream 322307 563555 ~ 563891 (-) True G304091
TU345512 lncRNA downstream 322801 557708 ~ 563397 (-) True G304086
TU345511 lncRNA downstream 352946 529353 ~ 533252 (-) True G304085
TU345721 lncRNA upstream 3149 889704 ~ 890029 (-) False G304261
TU345718 lncRNA upstream 3230 889785 ~ 890029 (-) False G304261
TU345719 lncRNA upstream 3230 889785 ~ 890059 (-) True G304261
TU345728 lncRNA upstream 7187 893742 ~ 894424 (-) True G304264
TU345729 lncRNA upstream 14645 901200 ~ 901632 (-) True G304265
CI01000092_00847979_00851661.mRNA mRNA downstream 34537 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_00579690_00648591.mRNA mRNA downstream 237607 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00508717_00509840.mRNA mRNA downstream 375870 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 377674 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 457578 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_01054403_01069241.mRNA mRNA upstream 167791 1054346 ~ 1069241 (-) True CI01000092_01054403_01069241
CI01000092_01086701_01097333.mRNA mRNA upstream 199849 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 211629 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01110360_01113717.mRNA mRNA upstream 223724 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01122961_01135673.mRNA mRNA upstream 236267 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
TU345836 other upstream 168749 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 171770 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 171812 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 171812 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 200107 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile