RNA id: TU345728


Basic Information

Item Value
RNA id TU345728
length 683
lncRNA type intronic
GC content 0.41
exon number 1
gene id G304264
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 893742 ~ 894424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTATATTGGGTGCACTCTCAAAGCAGGTGTCACACCCCTCTTAAAGTCCCCCTGAAATCAAAATTTAAGTTTTTTAGCTTTTAGTATGAATATGTTAGCCTTAAGGTTATGAATAAGCTGGTGTGTTCCAAAACAATGACAAAATTTGCATTTAGGAGATATAAGCATTCAAAACTTACAGTCTCTCACTTTCGCTAAAATGGATCACGGATTTTCATGACATCACATCGCACTTCAGTTTCCCGTCAAATCTTCGGTCCAATCAAATGCTCTCTAGAATCTGAAGTCCTGCCTCCTCCTAAACTCCTACAGACGCTGAAGCCTCGGCTGAAATCGGTCATTTGCTCACACATTTACTAGTTTTTACATGGTGAATGGCACATAGTGCTCTATATAGAGAATGGGGAACGATTGAGACAGTGTAAATATGCTTTCCTTTGACGCAAATGAAGTCCGTTTTCGCGTTAGTGTCACATGAACCGCTGCAACGCGAGCAGTCTGCTCCAGTCCAGACACAAGAGAGCACAGAGCAGATTATATGTGCGAGTCGGCACAGACCACAAAATGTATCAGAACCATTTGAATTCTGCACAGAATGCTGTATATAAGCGACATAAAGGACATTATGAGGAGAAACGGTTAGAGATTAGAAGGAAACAGAGGTTTTACAGAGTCTAACGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345719 lncRNA downstream 3683 889785 ~ 890059 (-) True G304261
TU345721 lncRNA downstream 3713 889704 ~ 890029 (-) False G304261
TU345718 lncRNA downstream 3713 889785 ~ 890029 (-) False G304261
TU345717 lncRNA downstream 7187 886198 ~ 886555 (-) True G304260
TU345672 lncRNA downstream 103721 789806 ~ 790021 (-) True G304226
TU345729 lncRNA upstream 6776 901200 ~ 901632 (-) True G304265
TU345732 lncRNA upstream 9962 904386 ~ 904688 (-) True G304268
TU345733 lncRNA upstream 15501 909925 ~ 910313 (-) True G304269
TU345738 lncRNA upstream 20867 915291 ~ 915491 (-) True G304274
TU345838 lncRNA upstream 163901 1058325 ~ 1058606 (-) False G304369
CI01000092_00847979_00851661.mRNA mRNA downstream 42081 847298 ~ 851661 (-) True CI01000092_00847979_00851661
CI01000092_00579690_00648591.mRNA mRNA downstream 245151 579190 ~ 648591 (-) True CI01000092_00579690_00648591
CI01000092_00508717_00509840.mRNA mRNA downstream 383414 508594 ~ 510328 (-) True CI01000092_00508717_00509840
CI01000092_00506401_00508318.mRNA mRNA downstream 385218 505739 ~ 508524 (-) True CI01000092_00506401_00508318
CI01000092_00418628_00428488.mRNA mRNA downstream 465122 417822 ~ 428620 (-) True CI01000092_00418628_00428488
CI01000092_01054403_01069241.mRNA mRNA upstream 159922 1054346 ~ 1069241 (-) True CI01000092_01054403_01069241
CI01000092_01086701_01097333.mRNA mRNA upstream 191980 1086404 ~ 1097333 (-) False CI01000092_01086701_01097333
CI01000092_01099061_01100011.mRNA mRNA upstream 203760 1098184 ~ 1100021 (-) True CI01000092_01099061_01100011
CI01000092_01110360_01113717.mRNA mRNA upstream 215855 1110279 ~ 1115228 (-) True CI01000092_01110360_01113717
CI01000092_01122961_01135673.mRNA mRNA upstream 228398 1122822 ~ 1136003 (-) True CI01000092_01122961_01135673
TU345836 other upstream 160880 1055304 ~ 1055722 (-) True G304368
TU345843 other upstream 163901 1058325 ~ 1058864 (-) False G304369
TU345840 other upstream 163943 1058367 ~ 1058920 (-) False G304369
TU345842 other upstream 163943 1058367 ~ 1058864 (-) True G304369
TU345834 other upstream 192238 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333

Expression Profile