RNA id: TU346315


Basic Information

Item Value
RNA id TU346315
length 208
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G304795
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2049125 ~ 2049332 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCTATTCTAGATCTGCGCCTATTAAATCGCTCTGTTAAGAAGCTCAAGTTCAGAATGAAACAAATCATGTCACAAATCAGGTCCGAGGACTGGTTTGTCACGATAGATCTGAAAGACGCATACTCTTATATATCCATACTTCCTCAACACAGGAAGTTCCTGAGGTTCGCTTCTGGGGGCGAAGCGTACCGATATCGGGTTCTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346294 lncRNA downstream 43928 2004746 ~ 2005197 (-) True G304777
TU346284 lncRNA downstream 71906 1972782 ~ 1977219 (-) True G304769
TU346281 lncRNA downstream 83642 1965231 ~ 1965483 (-) True G304768
TU346279 lncRNA downstream 84481 1964055 ~ 1964644 (-) False CI01000092_01964262_01964863
TU346280 lncRNA downstream 84638 1964432 ~ 1964487 (-) True G304767
TU346379 lncRNA upstream 76058 2125390 ~ 2161014 (-) True G304853
TU346428 lncRNA upstream 183187 2232519 ~ 2232949 (-) True G304895
TU346431 lncRNA upstream 189405 2238737 ~ 2239195 (-) True G304898
TU346433 lncRNA upstream 191073 2240405 ~ 2241173 (-) True G304900
TU346435 lncRNA upstream 195099 2244431 ~ 2244630 (-) True G304902
CI01000092_02043716_02044633.mRNA mRNA downstream 4453 2043391 ~ 2044672 (-) True CI01000092_02043716_02044633
CI01000092_02039063_02039980.mRNA mRNA downstream 8792 2038840 ~ 2040333 (-) True CI01000092_02039063_02039980
CI01000092_02026073_02027161.mRNA mRNA downstream 21600 2026062 ~ 2027525 (-) True CI01000092_02026073_02027161
CI01000092_01981235_01981861.mRNA mRNA downstream 67264 1980463 ~ 1981861 (-) True CI01000092_01981235_01981861
CI01000092_01964262_01964863.mRNA mRNA downstream 84262 1964079 ~ 1964863 (-) False CI01000092_01964262_01964863
CI01000092_02055330_02056247.mRNA mRNA upstream 5685 2055017 ~ 2056286 (-) True CI01000092_02055330_02056247
CI01000092_02072036_02082309.mRNA mRNA upstream 22396 2071728 ~ 2083780 (-) True CI01000092_02072036_02082309
CI01000092_02134927_02166170.mRNA mRNA upstream 84486 2133818 ~ 2166547 (-) True CI01000092_02134927_02166170
CI01000092_02191463_02196322.mRNA mRNA upstream 141824 2191156 ~ 2196570 (-) True CI01000092_02191463_02196322
CI01000092_02408861_02410832.mRNA mRNA upstream 359249 2408581 ~ 2411486 (-) True CI01000092_02408861_02410832
TU345950 other downstream 816833 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 952207 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 990205 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 990261 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 675262 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1628542 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2447082 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2755063 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 3104336 5153668 ~ 5154133 (-) True G306902

Expression Profile