RNA id: TU347486


Basic Information

Item Value
RNA id TU347486
length 230
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G305811
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3356846 ~ 3357075 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATATCTAGCTTCCACGAGACCGCCTTCCATATTAAACTTACGAAGTATAACTTATGTTGTGTCAGTTAAGTTTTTTCTGTAAGTTGAATAGGGAAGCTGTAGGATGTAGCGTAAGCTTTTCGAAGTTGAATACGGAAGGCGGTCTGGTGGAAGCTCGATATTTTACTTCATAACTTGTTAAATATGGATATTTTTCTTACACAAACACATCGCTTCACTACAGAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347598 lncRNA downstream 46547 3310093 ~ 3310299 (-) True G305922
TU347595 lncRNA downstream 49299 3307272 ~ 3307547 (-) True CI01000092_03307794_03308422
TU347492 lncRNA downstream 81488 3226834 ~ 3275358 (-) True G305817
TU347488 lncRNA downstream 273200 3051910 ~ 3083646 (-) True G305813
TU347573 lncRNA downstream 311893 3044742 ~ 3044953 (-) True G305898
TU347480 lncRNA upstream 292 3357367 ~ 3359859 (-) True G305805
TU347493 lncRNA upstream 6543 3363618 ~ 3364509 (-) True G305818
TU347468 lncRNA upstream 76196 3433271 ~ 3442950 (-) True G305793
TU347491 lncRNA upstream 90214 3447289 ~ 3449586 (-) True G305816
TU347666 lncRNA upstream 105339 3462414 ~ 3462976 (-) True G305990
CI01000092_03307794_03308422.mRNA mRNA downstream 48332 3307202 ~ 3308514 (-) False CI01000092_03307794_03308422
CI01000092_03271224_03274775.mRNA mRNA downstream 81560 3271224 ~ 3275286 (-) True CI01000092_03271224_03274775
CI01000092_03224848_03225687.mRNA mRNA downstream 131051 3224461 ~ 3225795 (-) True CI01000092_03224848_03225687
CI01000092_03103762_03184280.mRNA mRNA downstream 172566 3103105 ~ 3184280 (-) True CI01000092_03103762_03184280
CI01000092_03086245_03088783.mRNA mRNA downstream 267728 3086208 ~ 3089118 (-) True CI01000092_03086245_03088783
CI01000092_03365550_03416277.mRNA mRNA upstream 7932 3365007 ~ 3416277 (-) True CI01000092_03365550_03416277
CI01000092_03418301_03428309.mRNA mRNA upstream 61226 3418301 ~ 3428309 (-) True CI01000092_03418301_03428309
CI01000092_03600064_03611514.mRNA mRNA upstream 242839 3599914 ~ 3612148 (-) True CI01000092_03600064_03611514
CI01000092_03614992_03615400.mRNA mRNA upstream 257362 3614437 ~ 3616983 (-) True CI01000092_03614992_03615400
CI01000092_03630767_03645397.mRNA mRNA upstream 273551 3630626 ~ 3646156 (-) True CI01000092_03630767_03645397
TU347441 other downstream 631902 2724594 ~ 2724944 (-) True G305772
TU345950 other downstream 2124554 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 2259928 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 2297926 1058367 ~ 1058920 (-) False G304369
TU347691 other upstream 320799 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 1139339 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 1447320 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 1796593 5153668 ~ 5154133 (-) True G306902

Expression Profile