RNA id: TCONS_00019102


Basic Information

Item Value
RNA id TCONS_00019102
length 318
lncRNA type read_through
GC content 0.41
exon number 2
gene id XLOC_008895
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 837015 ~ 848792 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgaatcctcatatggTCTGTAAGGTATTGTTTCCAagaaaaactctttccacactgttggcaattgtaaggcttttctccagtgtgaatcctcacaTGGGTTGCAAGGTTTTGTTTCCAAGTGAAACTTTTTCCACAATGTAGGCAGATATTATGCTTTTCTCCATTGTGCATCCTCATATGGTCTGAAAGGTTTTGTTTCcgagtgaaactctttccacactgtggGCAAGTATGTCGCCTTTCTCCAGTGTGCATCATCATATGGCCTATAAGGTGTTGTTTAAAAgtgaaactctttccacattgttggcaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019100 lncRNA downstream 21996 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019099 lncRNA downstream 109273 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019098 lncRNA downstream 203607 622709 ~ 633408 (-) True XLOC_008885
TCONS_00017553 lncRNA downstream 235656 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017552 lncRNA downstream 241752 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019103 lncRNA upstream 21169 869961 ~ 909037 (-) True XLOC_008896
TCONS_00019104 lncRNA upstream 26536 875328 ~ 875985 (-) True XLOC_008897
TCONS_00019105 lncRNA upstream 28412 877204 ~ 908307 (-) True XLOC_008898
TCONS_00019106 lncRNA upstream 50297 899089 ~ 900879 (-) True XLOC_008899
TCONS_00019107 lncRNA upstream 137352 986144 ~ 993389 (-) False XLOC_008902
TCONS_00017579 mRNA downstream 56516 765760 ~ 780499 (-) False XLOC_008890
TCONS_00017569 mRNA downstream 56543 722475 ~ 780472 (-) False XLOC_008890
TCONS_00017576 mRNA downstream 71000 749230 ~ 766015 (-) False XLOC_008890
TCONS_00017568 mRNA downstream 74693 722475 ~ 762322 (-) False XLOC_008890
TCONS_00017578 mRNA downstream 74696 758188 ~ 762319 (-) False XLOC_008890
TCONS_00017580 mRNA upstream 65006 913798 ~ 917274 (-) False XLOC_008890
TCONS_00017581 mRNA upstream 71506 920298 ~ 923981 (-) True XLOC_008900
TCONS_00017582 mRNA upstream 76408 925200 ~ 931848 (-) False XLOC_008890
TCONS_00017583 mRNA upstream 77733 926525 ~ 931815 (-) False XLOC_008890
TCONS_00017584 mRNA upstream 77736 926528 ~ 931815 (-) False XLOC_008890
TCONS_00017537 other downstream 411259 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 487448 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 472998 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 986179 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1417177 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1776236 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 1887591 2736383 ~ 2736498 (-) True XLOC_008940